Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011248.1 Corchorus capsularis cultivar CVL-1 contig11269, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32868

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
311--355
22
2.1
21
84
12
56
60
2
35
2
1.22
3798--3903
14
7.6
14
67
6
72
45
4
7
42
1.53
3780--3904
41
3.0
41
96
1
223
43
4
6
45
1.50
3965--3995
16
1.9
16
93
0
53
64
6
19
9
1.45
10256--10286
6
5.2
6
100
0
62
32
0
16
51
1.44
17758--17816
21
2.8
21
89
0
73
23
22
25
28
1.99
20864--20948
24
3.4
24
85
9
125
28
37
5
28
1.80
25153--25270
26
4.7
26
73
9
111
54
9
1
34
1.43
25279--25306
13
2.2
13
100
0
56
78
0
0
21
0.75
26850--26926
29
2.6
28
81
4
82
14
24
16
44
1.85
27715--27754
21
2.0
20
85
9
55
40
12
7
40
1.71
27722--27798
21
3.7
20
81
6
82
38
14
6
40
1.72
27831--28086
131
2.0
131
80
6
295
35
17
8
38
1.80
27915--28087
65
2.6
66
77
3
188
37
19
7
35
1.80
27722--28087
22
16.7
22
70
12
184
36
17
7
38
1.79
30166--30314
22
6.8
22
76
6
95
39
16
8
34
1.80
30144--30314
44
3.9
44
79
2
110
39
17
8
34
1.79
30163--30315
66
2.3
66
82
6
168
39
16
8
34
1.80
30891--31186
109
2.7
109
91
4
450
36
11
2
50
1.50

Tables:   1

The End!