Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011250.1 Corchorus capsularis cultivar CVL-1 contig11271, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117427

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
134--170
18
2.1
19
85
15
60
48
0
0
51
1.00
6119--6157
2
19.5
2
100
0
78
0
51
0
48
1.00
14562--14629
26
2.6
26
95
0
118
54
11
1
32
1.46
14562--14629
15
5.1
14
70
26
58
54
11
1
32
1.46
14683--14730
10
4.7
10
87
12
71
68
2
2
27
1.11
15858--15922
15
4.2
15
72
18
53
13
7
38
40
1.74
15862--15929
32
2.1
32
94
0
118
13
7
38
41
1.72
15862--15937
32
2.4
32
90
0
107
13
7
38
40
1.73
16270--16301
15
2.0
17
88
11
50
68
0
21
9
1.17
23286--23310
12
2.1
12
100
0
50
32
28
8
32
1.86
45983--46091
16
6.4
16
74
19
87
4
24
38
32
1.76
45992--46091
23
4.3
22
80
14
96
4
25
39
32
1.74
46538--46585
21
2.3
21
85
0
69
56
4
8
31
1.48
48002--48031
2
15.5
2
93
6
53
46
0
0
53
1.00
52225--52266
21
2.0
22
90
4
68
4
28
35
30
1.78
52314--52434
13
8.5
15
73
16
91
51
1
2
44
1.24
52316--52363
24
1.9
26
87
8
73
50
0
0
50
1.00
52315--52368
24
2.3
23
80
17
67
51
0
0
48
1.00
52333--52442
39
2.8
39
78
10
111
50
1
2
44
1.26
52333--52442
41
2.8
38
75
17
102
50
1
2
44
1.26
53172--53274
16
6.4
16
84
4
127
10
19
35
33
1.86
53183--53292
32
3.5
32
83
3
125
10
18
38
32
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53169--53274
48
2.2
48
84
3
142
10
19
35
33
1.86
54414--54443
2
15.0
2
100
0
60
50
0
0
50
1.00
61665--61694
4
7.5
4
100
0
60
76
0
23
0
0.78
66196--66267
29
2.5
28
88
8
108
25
2
4
68
1.21
71990--72051
32
1.9
32
96
0
115
50
12
20
16
1.78
71990--72062
32
2.4
30
86
8
105
45
12
27
15
1.81
88342--88402
32
1.9
32
96
0
113
29
13
4
52
1.61
88717--88780
32
2.0
31
87
3
92
23
14
12
50
1.76
89247--89303
27
2.1
27
100
0
114
36
3
7
52
1.46
107452--107481
15
2.0
15
100
0
60
20
13
6
60
1.55
110018--110042
2
12.5
2
100
0
50
0
48
0
52
1.00
110349--110460
51
2.2
50
88
3
172
37
16
17
27
1.92
115298--115338
19
2.2
19
90
0
64
31
12
17
39
1.86

Tables:   1

The End!