Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011251.1 Corchorus capsularis cultivar CVL-1 contig11272, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80574

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1336--1444
16
6.8
15
76
15
94
31
38
21
9
1.84
1336--1448
32
3.5
31
79
13
104
31
38
20
8
1.83
1336--1448
48
2.4
48
83
3
147
31
38
20
8
1.83
2230--2260
16
1.9
16
93
0
53
29
38
22
9
1.86
2298--2416
16
7.6
16
80
5
118
34
36
21
8
1.83
2305--2369
9
7.9
9
74
19
61
32
36
21
9
1.85
2283--2414
32
4.2
33
73
12
116
34
37
20
8
1.83
2282--2414
48
2.8
48
80
8
150
34
36
20
8
1.82
32239--32360
32
3.8
32
88
0
190
51
31
12
4
1.60
32239--32360
16
7.6
16
78
0
118
51
31
12
4
1.60
32505--32574
15
4.5
15
84
7
95
38
35
8
17
1.80
32488--32558
32
2.2
32
89
0
106
42
36
9
11
1.74
32501--32564
32
2.0
31
96
3
119
37
37
9
15
1.80
33291--33343
27
2.0
27
85
7
74
39
9
1
49
1.46
42718--42749
1
32.0
1
100
0
64
0
0
0
100
0.00
44275--44330
27
2.1
27
89
0
85
26
8
7
57
1.55
63601--63631
2
15.5
2
100
0
62
51
0
0
48
1.00
63764--63793
2
15.0
2
100
0
60
50
0
0
50
1.00
67842--67870
12
2.4
12
100
0
58
34
6
10
48
1.64
67874--68246
189
2.0
189
94
2
651
38
12
19
28
1.88

Tables:   1

The End!