Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011253.1 Corchorus capsularis cultivar CVL-1 contig11274, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1702
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31


Found at i:696 original size:52 final size:52

Alignment explanation


    Indices: 591--715  Score: 135
    Period size: 52  Copynumber: 2.4  Consensus size: 52

        581 CAACAAATTC

                                   *            **   *      *   
        591 ATTTGCACCATTACACCTTTAACTATGTAATAGGAATGCATTTATGACTTCA
          1 ATTTGCACCATTACACCTTTAACCATGTAATAGGAACACATGTATGACGTCA

                   *       *        *                      *     
        643 ATTTGCATCATTACAGCTTTAACCGTGTAATAGGAACACATAGTA-GTCGTCA
          1 ATTTGCACCATTACACCTTTAACCATGTAATAGGAACACAT-GTATGACGTCA

               *         *       
        695 ATTGGCACCATTATACCTTTA
          1 ATTTGCACCATTACACCTTTA

        716 GTGAAATAGG


Statistics
Matches: 59,  Mismatches: 13, Indels: 2
        0.80            0.18        0.03

Matches are distributed among these distances:
  52   57  0.97
  53    2  0.03

ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34


Consensus pattern (52 bp):   
ATTTGCACCATTACACCTTTAACCATGTAATAGGAACACATGTATGACGTCA
Done.