Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011254.1 Corchorus capsularis cultivar CVL-1 contig11275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139627

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
636--776
53
2.7
51
86
4
187
34
18
12
35
1.88
13698--13725
13
2.2
13
100
0
56
0
7
0
92
0.37
20921--20946
1
26.0
1
100
0
52
100
0
0
0
0.00
26314--26343
9
3.4
9
90
9
53
26
30
0
43
1.55
29010--29081
35
2.1
35
100
0
144
34
19
5
40
1.75
33474--33502
15
1.9
15
100
0
58
34
0
20
44
1.52
41802--42004
103
2.0
103
89
1
309
32
19
16
32
1.94
51133--51172
21
2.0
21
90
5
64
25
5
7
62
1.42
54516--54545
2
15.0
2
100
0
60
50
0
0
50
1.00
62455--62752
109
2.6
111
91
5
449
49
1
11
37
1.48
64341--64375
6
6.0
6
93
6
54
34
0
2
62
1.10
64341--64375
11
3.1
11
88
8
52
34
0
2
62
1.10
72810--72874
32
2.0
34
90
6
107
27
10
13
47
1.76
78176--78208
3
11.0
3
100
0
66
0
33
0
66
0.92
78210--78407
104
1.9
99
89
8
301
23
30
10
35
1.89
79630--79774
72
2.0
72
100
0
290
16
24
34
24
1.95
104147--104177
5
6.4
5
92
7
55
0
19
0
80
0.71
116753--116807
15
3.4
16
80
12
60
50
36
7
5
1.53
133369--133413
5
9.6
5
90
4
60
0
13
2
84
0.72
136092--136867
389
2.0
389
96
0
1444
34
14
16
34
1.90
137168--137229
32
1.9
32
90
0
97
25
12
12
48
1.77
137361--137421
32
1.9
32
93
0
104
22
14
14
47
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137078--137458
192
2.0
193
90
2
604
25
14
12
47
1.79
138411--138461
25
2.0
26
84
3
68
47
27
5
19
1.73
139050--139094
21
2.1
22
83
4
56
20
33
8
37
1.83

Tables:   1

The End!