Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011256.1 Corchorus capsularis cultivar CVL-1 contig11277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83313

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1109--1163
13
4.4
13
78
13
53
40
0
0
60
0.97
2918--3116
69
2.9
69
95
2
346
24
11
13
50
1.74
6566--6861
157
1.9
157
96
0
547
29
19
14
36
1.91
9492--9516
2
12.5
2
100
0
50
0
48
0
52
1.00
10390--10421
3
10.7
3
100
0
64
68
0
31
0
0.90
21281--21313
2
17.0
2
93
6
59
48
0
0
51
1.00
43652--43718
2
34.5
2
80
16
70
49
0
4
46
1.22
43842--44192
165
2.1
165
85
3
474
27
14
17
40
1.88
45826--45883
30
1.9
30
100
0
116
17
18
36
27
1.94
48325--48367
22
1.9
23
90
4
70
23
23
16
37
1.94
51087--51114
1
28.0
1
100
0
56
0
100
0
0
0.00
53119--53183
21
3.1
21
72
12
62
78
1
16
3
0.96
53793--53824
12
2.5
13
90
10
57
59
0
0
40
0.97
58061--58135
29
2.5
32
82
10
95
32
26
18
22
1.97
61088--61123
2
18.0
2
94
0
63
50
0
2
47
1.15
62041--62070
14
2.1
14
100
0
60
30
6
43
20
1.77
62130--62203
29
2.6
28
82
4
94
18
25
18
36
1.94
62274--62350
29
2.6
29
89
2
118
40
18
24
16
1.91
68293--68353
17
3.7
17
80
6
63
42
0
1
55
1.09
76700--76733
2
17.5
2
93
6
61
52
0
0
47
1.00
76961--77032
31
2.3
31
75
13
76
25
2
9
62
1.39

Tables:   1

The End!