Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011268.1 Corchorus capsularis cultivar CVL-1 contig11289, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 895

Length: 1492
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38


Found at i:35 original size:21 final size:21

Alignment explanation


    Indices: 1--40  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

                 *   *           
          1 CACATTGATTATTCATTAGAT
          1 CACATAGATCATTCATTAGAT

                               
         22 CACATAGATCATTCATTAG
          1 CACATAGATCATTCATTAG

         41 TTTGGTAGAG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38


Consensus pattern (21 bp):   
CACATAGATCATTCATTAGAT

Found at i:330 original size:6 final size:6

Alignment explanation


    Indices: 321--355  Score: 52
    Period size: 6  Copynumber: 5.8  Consensus size: 6

        311 ATCAAAATAT

                 *      *                           
        321 AATAAT AATAAT AATAAG AATAAG AATAAG AATAA
          1 AATAAG AATAAG AATAAG AATAAG AATAAG AATAA

        356 AATTTGTTGA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.69, C:0.00, G:0.09, T:0.23


Consensus pattern (6 bp):   
AATAAG

Done.