Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011269.1 Corchorus capsularis cultivar CVL-1 contig11290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 165027
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:12463 original size:18 final size:18
Alignment explanation
Indices: 12437--12472 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
12427 AAATGTCATT
*
12437 ATTTTTTGTAACAAGCAG
1 ATTTGTTGTAACAAGCAG
12455 ATTTGTTGTAACAAGCAG
1 ATTTGTTGTAACAAGCAG
12473 CAACAGATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.36
Consensus pattern (18 bp):
ATTTGTTGTAACAAGCAG
Found at i:12543 original size:5 final size:5
Alignment explanation
Indices: 12533--12575 Score: 68
Period size: 5 Copynumber: 8.4 Consensus size: 5
12523 AAAGAGATAA
*
12533 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTTT ATTTT TTTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT A-TTTT ATTTT ATTTT AT
12576 ATTCTTCATA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 30 0.86
6 5 0.14
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
ATTTT
Found at i:12553 original size:15 final size:15
Alignment explanation
Indices: 12533--12575 Score: 68
Period size: 16 Copynumber: 2.8 Consensus size: 15
12523 AAAGAGATAA
12533 ATTTTATTTTATTTT
1 ATTTTATTTTATTTT
12548 ATTTTATTTTATTTTT
1 ATTTTATTTTA-TTTT
*
12564 ATTTTTTTTTAT
1 ATTTTATTTTAT
12576 ATTCTTCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 12 0.46
16 14 0.54
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (15 bp):
ATTTTATTTTATTTT
Found at i:21381 original size:11 final size:11
Alignment explanation
Indices: 21365--21395 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
21355 TGGGTTGATG
21365 TAAAAAAAATT
1 TAAAAAAAATT
21376 TAAAAAAAA-T
1 TAAAAAAAATT
21386 TAAAAAAAAT
1 TAAAAAAAAT
21396 GAAAGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
TAAAAAAAATT
Found at i:21497 original size:15 final size:14
Alignment explanation
Indices: 21473--21520 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
21463 AAATTACTTA
21473 GTTTATTAGTTTAT
1 GTTTATTAGTTTAT
21487 GTTTA--A--TTA-
1 GTTTATTAGTTTAT
21496 GTTTATTAGTTTAT
1 GTTTATTAGTTTAT
21510 GTTTAATTAGT
1 GTTT-ATTAGT
21521 ATCTAATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 11
0.72 0.00 0.28
Matches are distributed among these distances:
9 5 0.18
10 3 0.11
11 1 0.04
12 1 0.04
13 3 0.11
14 9 0.32
15 6 0.21
ACGTcount: A:0.25, C:0.00, G:0.15, T:0.60
Consensus pattern (14 bp):
GTTTATTAGTTTAT
Found at i:21541 original size:26 final size:25
Alignment explanation
Indices: 21470--21567 Score: 125
Period size: 26 Copynumber: 4.0 Consensus size: 25
21460 TTAAAATTAC
21470 TTAGT-TT-ATTAGTTTATGTTTAA
1 TTAGTATTAATTAGTTTATGTTTAA
21493 TTAGT-TT-ATTAGTTTATGTTTAA
1 TTAGTATTAATTAGTTTATGTTTAA
21516 TTAGTATCTAATTAGTTTAT-TATTAA
1 TTAGTAT-TAATTAGTTTATGT-TTAA
*
21542 TTAGTATTTAATTAGTTTATGATTAA
1 TTAGTA-TTAATTAGTTTATGTTTAA
21568 AATGAAGGAA
Statistics
Matches: 68, Mismatches: 1, Indels: 9
0.87 0.01 0.12
Matches are distributed among these distances:
23 28 0.41
24 1 0.01
25 2 0.03
26 36 0.53
27 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.11, T:0.57
Consensus pattern (25 bp):
TTAGTATTAATTAGTTTATGTTTAA
Found at i:21544 original size:15 final size:15
Alignment explanation
Indices: 21420--21567 Score: 53
Period size: 15 Copynumber: 9.7 Consensus size: 15
21410 TAAAAAATTT
*
21420 TTTAATATTAATTAG
1 TTTATTATTAATTAG
* *
21435 TTTATGATTAGTT--
1 TTTATTATTAATTAG
* *
21448 TTAATTAGTTAATTAAA
1 TTTATTA-TTAATT-AG
* *
21465 ATTACTTAGTTTATTAG
1 TTTA-TTA-TTAATTAG
21482 TTTATGT-TTAATTAG
1 TTTAT-TATTAATTAG
*
21497 TTTATTAGT--TTATG
1 TTTATTATTAATTA-G
21511 TTTAATTAGTATCTAATTAG
1 TTT-A-T--TAT-TAATTAG
21531 TTTATTATTAATTAG
1 TTTATTATTAATTAG
21546 --TA-T-TTAATTAG
1 TTTATTATTAATTAG
*
21557 TTTATGATTAA
1 TTTATTATTAA
21568 AATGAAGGAA
Statistics
Matches: 99, Mismatches: 15, Indels: 38
0.65 0.10 0.25
Matches are distributed among these distances:
11 8 0.08
12 1 0.01
13 12 0.12
14 10 0.10
15 35 0.35
16 5 0.05
17 7 0.07
18 12 0.12
19 2 0.02
20 4 0.04
21 3 0.03
ACGTcount: A:0.33, C:0.01, G:0.10, T:0.55
Consensus pattern (15 bp):
TTTATTATTAATTAG
Found at i:21615 original size:24 final size:25
Alignment explanation
Indices: 21576--21635 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
21566 AAAATGAAGG
*
21576 AAAATGAA-TTTGAAG-ATTTGTTA
1 AAAATGAAGTTTGAAGAAGTTGTTA
21599 AAAATGAAGTTTGAAGAAGTTGTTA
1 AAAATGAAGTTTGAAGAAGTTGTTA
*
21624 GAAATGAAGTTT
1 AAAATGAAGTTT
21636 AGAGTTTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 8 0.24
24 7 0.21
25 18 0.55
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (25 bp):
AAAATGAAGTTTGAAGAAGTTGTTA
Found at i:21747 original size:21 final size:22
Alignment explanation
Indices: 21705--21749 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
21695 GCAAAAGTGT
**
21705 AAAAAGGGGGACGGTATTTAGC
1 AAAAAGGGGGACGGTAAATAGC
*
21727 AAAATGGGGG-CGGTAAATAGC
1 AAAAAGGGGGACGGTAAATAGC
21748 AA
1 AA
21750 TCCAGTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.40, C:0.09, G:0.36, T:0.16
Consensus pattern (22 bp):
AAAAAGGGGGACGGTAAATAGC
Found at i:21918 original size:22 final size:21
Alignment explanation
Indices: 21888--21935 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
21878 CTGTCATAAA
*
21888 TTTTTCTAAACATCGTCCCAG
1 TTTTTCTAAACACCGTCCCAG
*
21909 TTTTTGCTAAACACCGTCCCAT
1 TTTTT-CTAAACACCGTCCCAG
21931 TTTTT
1 TTTTT
21936 ACACTTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.21, C:0.27, G:0.08, T:0.44
Consensus pattern (21 bp):
TTTTTCTAAACACCGTCCCAG
Found at i:22493 original size:33 final size:33
Alignment explanation
Indices: 22456--22523 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
22446 AGGAGGGCAA
22456 CATGCCATCGACA-TAGCCGCCCTCCTGGGGCGG
1 CATGCCATCGACACTA-CCGCCCTCCTGGGGCGG
* *
22489 CATGCCATGGACACTACCTCCCTCCTGGGGCGG
1 CATGCCATCGACACTACCGCCCTCCTGGGGCGG
22522 CA
1 CA
22524 CCGACAACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.94
34 2 0.06
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (33 bp):
CATGCCATCGACACTACCGCCCTCCTGGGGCGG
Found at i:22706 original size:8 final size:9
Alignment explanation
Indices: 22686--22710 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
22676 AACAAAAGGC
22686 AAAAGTGTA
1 AAAAGTGTA
22695 AAAAGTGTA
1 AAAAGTGTA
22704 AAAAGTG
1 AAAAGTG
22711 GGGCGGGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.24, T:0.20
Consensus pattern (9 bp):
AAAAGTGTA
Found at i:24104 original size:21 final size:21
Alignment explanation
Indices: 24078--24121 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
24068 TGCAAGATTG
24078 GTTCCCATCGATGGATTGGCT
1 GTTCCCATCGATGGATTGGCT
24099 GTTCCCATCGATGGATTGGCT
1 GTTCCCATCGATGGATTGGCT
24120 GT
1 GT
24122 CACAGGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.23, G:0.30, T:0.34
Consensus pattern (21 bp):
GTTCCCATCGATGGATTGGCT
Found at i:31948 original size:32 final size:32
Alignment explanation
Indices: 31907--31988 Score: 146
Period size: 32 Copynumber: 2.6 Consensus size: 32
31897 ATCTGATTTC
* *
31907 AAACCAAATTTATTCCATGATAACTATTCCTG
1 AAACCAAATTTACTCCATGACAACTATTCCTG
31939 AAACCAAATTTACTCCATGACAACTATTCCTG
1 AAACCAAATTTACTCCATGACAACTATTCCTG
31971 AAACCAAATTTACTCCAT
1 AAACCAAATTTACTCCAT
31989 AGCTTTCTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.39, C:0.26, G:0.05, T:0.30
Consensus pattern (32 bp):
AAACCAAATTTACTCCATGACAACTATTCCTG
Found at i:37151 original size:12 final size:12
Alignment explanation
Indices: 37134--37164 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
37124 CTTCATTTAC
37134 ATATATATACAT
1 ATATATATACAT
*
37146 ATATATGTACAT
1 ATATATATACAT
37158 ATATATA
1 ATATATA
37165 CATTTACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (12 bp):
ATATATATACAT
Found at i:37172 original size:16 final size:16
Alignment explanation
Indices: 37153--37183 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37143 CATATATATG
37153 TACATATATATACATT
1 TACATATATATACATT
*
37169 TACATATATGTACAT
1 TACATATATATACAT
37184 AAAGTAGGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.03, T:0.42
Consensus pattern (16 bp):
TACATATATATACATT
Found at i:37184 original size:10 final size:10
Alignment explanation
Indices: 37131--37167 Score: 56
Period size: 10 Copynumber: 3.5 Consensus size: 10
37121 TTTCTTCATT
37131 TACATATATA
1 TACATATATA
37141 TACATATATA
1 TACATATATA
37151 TGTACATATATA
1 --TACATATATA
37163 TACAT
1 TACAT
37168 TTACATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 15 0.60
12 10 0.40
ACGTcount: A:0.46, C:0.11, G:0.03, T:0.41
Consensus pattern (10 bp):
TACATATATA
Found at i:37797 original size:29 final size:28
Alignment explanation
Indices: 37730--37798 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
37720 TGCTACGATG
*
37730 AATTTGGGATATAACGTTTTAGAACTAT
1 AATTTGGGATATAACGTTTCAGAACTAT
* * *
37758 CATTTCAGGATATAAGGTTTCAGAA-TGAT
1 AATTT-GGGATATAACGTTTCAGAACT-AT
37787 AAATTTGGGATA
1 -AATTTGGGATA
37799 AAATCCACGT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
28 5 0.16
29 23 0.72
30 4 0.12
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.36
Consensus pattern (28 bp):
AATTTGGGATATAACGTTTCAGAACTAT
Found at i:37906 original size:58 final size:58
Alignment explanation
Indices: 37837--37954 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 58
37827 ATGTCAGCAC
37837 TTAACGGCGCGTGCATCTCAAATCCTTGTTTCCGTTAGACTATATCCTAATTTGATCG
1 TTAACGGCGCGTGCATCTCAAATCCTTGTTTCCGTTAGACTATATCCTAATTTGATCG
*
37895 TTAACGGCGCGTGCATCTCAAATCCTTGTTTCCGTTAGACTATATCCTGATTTGATCG
1 TTAACGGCGCGTGCATCTCAAATCCTTGTTTCCGTTAGACTATATCCTAATTTGATCG
37953 TT
1 TT
37955 TTCAGTAACG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (58 bp):
TTAACGGCGCGTGCATCTCAAATCCTTGTTTCCGTTAGACTATATCCTAATTTGATCG
Found at i:37973 original size:31 final size:29
Alignment explanation
Indices: 37935--38040 Score: 86
Period size: 31 Copynumber: 3.5 Consensus size: 29
37925 TCCGTTAGAC
* * *
37935 TATATCCTGATTTGATCGTTTTCAGTAACGT
1 TATATCCTGAATTG-GCGTTTT-AGAAACGT
*
37966 TATATCCTGAATTGGCGTTTTTGAAACGT
1 TATATCCTGAATTGGCGTTTTAGAAACGT
** * ***
37995 TATATCCCAAATTGATCGTTGCGGCAAACGT
1 TATATCCTGAATTG-GCGTTTTAG-AAACGT
38026 TATATCCTGAATTGG
1 TATATCCTGAATTGG
38041 TTATTTAGCC
Statistics
Matches: 60, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
29 18 0.30
30 11 0.18
31 31 0.52
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (29 bp):
TATATCCTGAATTGGCGTTTTAGAAACGT
Found at i:37999 original size:29 final size:30
Alignment explanation
Indices: 37961--38040 Score: 90
Period size: 31 Copynumber: 2.7 Consensus size: 30
37951 CGTTTTCAGT
***
37961 AACGTTATATCCTGAATTGGCGTTTTTG-A
1 AACGTTATATCCTGAATTGGCGTTGCGGCA
** *
37990 AACGTTATATCCCAAATTGATCGTTGCGGCA
1 AACGTTATATCCTGAATTG-GCGTTGCGGCA
38021 AACGTTATATCCTGAATTGG
1 AACGTTATATCCTGAATTGG
38041 TTATTTAGCC
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
29 17 0.43
30 5 0.12
31 18 0.45
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (30 bp):
AACGTTATATCCTGAATTGGCGTTGCGGCA
Found at i:50799 original size:15 final size:15
Alignment explanation
Indices: 50781--50812 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50771 TCTTTTTAGT
*
50781 TTTTAGTTTTTACAC
1 TTTTACTTTTTACAC
50796 TTTTACTTTTTACAC
1 TTTTACTTTTTACAC
50811 TT
1 TT
50813 CAATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.16, G:0.03, T:0.62
Consensus pattern (15 bp):
TTTTACTTTTTACAC
Found at i:51018 original size:16 final size:16
Alignment explanation
Indices: 50972--51018 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 16
50962 TACATTGATT
50972 AAATTAGGCAAGTAAA
1 AAATTAGGCAAGTAAA
* * *
50988 ATATT-GCCAA-AAAA
1 AAATTAGGCAAGTAAA
51002 AAATTAGGCAAGTAAA
1 AAATTAGGCAAGTAAA
51018 A
1 A
51019 TACTAAAAAC
Statistics
Matches: 23, Mismatches: 6, Indels: 4
0.70 0.18 0.12
Matches are distributed among these distances:
14 7 0.30
15 8 0.35
16 8 0.35
ACGTcount: A:0.57, C:0.09, G:0.15, T:0.19
Consensus pattern (16 bp):
AAATTAGGCAAGTAAA
Found at i:57358 original size:4 final size:4
Alignment explanation
Indices: 57349--57375 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
57339 CTGTTATTCT
57349 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
57376 TTGCCTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:58874 original size:6 final size:6
Alignment explanation
Indices: 58863--58896 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
58853 TATAACCTTG
58863 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
58897 GGTACTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:68823 original size:22 final size:22
Alignment explanation
Indices: 68795--68839 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
68785 ATCAATTTAC
68795 TTAGTCTCTATTAATGGTATAG
1 TTAGTCTCTATTAATGGTATAG
68817 TTAGTCTCTATTAATGGTATAG
1 TTAGTCTCTATTAATGGTATAG
68839 T
1 T
68840 AAGTATGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.47
Consensus pattern (22 bp):
TTAGTCTCTATTAATGGTATAG
Found at i:69115 original size:24 final size:24
Alignment explanation
Indices: 69088--69173 Score: 129
Period size: 24 Copynumber: 3.6 Consensus size: 24
69078 GAGGTAAACG
* *
69088 CATTTTCATTTTCC-GGAGCGTTGC
1 CATTTTCAATTTCCAGG-GCATTGC
*
69112 CATTTTCATTTTCCAGGGCATTGC
1 CATTTTCAATTTCCAGGGCATTGC
69136 CATTTTCAATTTCCAGGGCATTGC
1 CATTTTCAATTTCCAGGGCATTGC
69160 CATTTTCAATTTCC
1 CATTTTCAATTTCC
69174 GGGGTTTCCG
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
24 57 0.97
25 2 0.03
ACGTcount: A:0.17, C:0.26, G:0.15, T:0.42
Consensus pattern (24 bp):
CATTTTCAATTTCCAGGGCATTGC
Found at i:72273 original size:14 final size:14
Alignment explanation
Indices: 72254--72282 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
72244 AGTAGAAATT
72254 TTCCATACAACAGA
1 TTCCATACAACAGA
72268 TTCCATACAACAGA
1 TTCCATACAACAGA
72282 T
1 T
72283 ACACAAGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.28, G:0.07, T:0.24
Consensus pattern (14 bp):
TTCCATACAACAGA
Found at i:74707 original size:3 final size:3
Alignment explanation
Indices: 74699--74745 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
74689 AAAGTAAGGG
74699 TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
74746 AAATAATAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:75234 original size:23 final size:23
Alignment explanation
Indices: 75204--75249 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
75194 CAAACAATTT
75204 TGAGCACTCCCGCTCGGTCTCTA
1 TGAGCACTCCCGCTCGGTCTCTA
*
75227 TGAGCACTCTCGCTCGGTCTCTA
1 TGAGCACTCCCGCTCGGTCTCTA
75250 CAAACCAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.13, C:0.37, G:0.22, T:0.28
Consensus pattern (23 bp):
TGAGCACTCCCGCTCGGTCTCTA
Found at i:75274 original size:21 final size:20
Alignment explanation
Indices: 75246--75284 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
75236 TCGCTCGGTC
*
75246 TCTACAAACCAATCATCACA
1 TCTACAAACCAAACATCACA
*
75266 TCTATCAAAGCAAACATCA
1 TCTA-CAAACCAAACATCA
75285 AACCAAACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.31, G:0.03, T:0.21
Consensus pattern (20 bp):
TCTACAAACCAAACATCACA
Found at i:76145 original size:23 final size:23
Alignment explanation
Indices: 76115--76160 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
76105 CAAACAATCT
76115 TGAGCACTCCCGCTCGGTCTCTA
1 TGAGCACTCCCGCTCGGTCTCTA
**
76138 TGAGCACTCTTGCTCGGTCTCTA
1 TGAGCACTCCCGCTCGGTCTCTA
76161 CAAACCAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.13, C:0.35, G:0.22, T:0.30
Consensus pattern (23 bp):
TGAGCACTCCCGCTCGGTCTCTA
Found at i:76185 original size:21 final size:20
Alignment explanation
Indices: 76157--76195 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
76147 TTGCTCGGTC
*
76157 TCTACAAACCAATCATCACA
1 TCTACAAACCAAACATCACA
*
76177 TCTATCAAAGCAAACATCA
1 TCTA-CAAACCAAACATCA
76196 AACCAAACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.31, G:0.03, T:0.21
Consensus pattern (20 bp):
TCTACAAACCAAACATCACA
Found at i:76786 original size:911 final size:911
Alignment explanation
Indices: 75026--77373 Score: 4624
Period size: 911 Copynumber: 2.6 Consensus size: 911
75016 TCTATCAAAT
* * *
75026 TAAATCATCCACACAAGACAGAAGAATTTACGTGATTTGGCACTAAACTTGTCTACATCCACGGA
1 TAAATCATTCACACAAGACAGAAGAATTTACGTGGTTTGGCACTGAACTTGTCTACATCCACGGA
75091 GAAGAGAAATCCACTAGTTATAGAAAATTACATCAACACATAATTATCAATAACCCTCGCTCAAT
66 GAAGAGAAATCCACTAGTTATAGAAAATTACATCAACACATAATTATCAATAACCCTCGCTCAAT
*
75156 CTATCAACCCAATCTAACAATCAATTCTAAACCAAACCCAAACAATTTTGAGCACTCCCGCTCGG
131 CTATCAACCCAATCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCACTCCCGCTCGG
*
75221 TCTCTATGAGCACTCTCGCTCGGTCTCTACAAACCAATCATCACATCTATCAAAGCAAACATCAA
196 TCTCTATGAGCACTCTTGCTCGGTCTCTACAAACCAATCATCACATCTATCAAAGCAAACATCAA
75286 ACCAAACAATCTCACACACACCCATAAGGACCATCCTTTTGTCCTATGGGGTGTCTCCACCCAAA
261 ACCAAACAATCTCACACACACCCATAAGGACCATCCTTTTGTCCTATGGGGTGTCTCCACCCAAA
75351 TCTAATCCTTAGACTACATCTTTTCTCCAAGCATACAAAAAACCTATAGAGAAACTCTCTATTTA
326 TCTAATCCTTAGACTACATCTTTTCTCCAAGCATACAAAAAACCTATAGAGAAACTCTCTATTTA
75416 TACTAGCATAAACTTAGCCTCCAAGTAATCCTTTTCCTAATAGGATTCTTGTTTACCAAGTCTTT
391 TACTAGCATAAACTTAGCCTCCAAGTAATCCTTTTCCTAATAGGATTCTTGTTTACCAAGTCTTT
75481 TTGTCCACCAATCAATAGGGCTAAAAAATCCCAATCCAAATCTAATTAGGATTTGAGTCAAAATC
456 TTGTCCACCAATCAATAGGGCTAAAAAATCCCAATCCAAATCTAATTAGGATTTGAGTCAAAATC
75546 CTAACAATCTCCACCTTGACTCGAATTCCATCGAATCTTCAATCTTTAATCAATCTTCAAGGACA
521 CTAACAATCTCCACCTTGACTCGAATTCCATCGAATCTTCAATCTTTAATCAATCTTCAAGGACA
75611 TGCATGACTCCACCTACGATGAAAGTCTCACAATCTTCAAGCAATCTAATCTTGTGTGTCTTCAT
586 TGCATGACTCCACCTACGATGAAAGTCTCACAATCTTCAAGCAATCTAATCTTGTGTGTCTTCAT
75676 CTTCACTACATCATCTTCAACTTTAATTCCGAATCAAATCTTGCTTTCCATCCAAATGTGGGTAA
651 CTTCACTACATCATCTTCAACTTTAATTCCGAATCAAATCTTGCTTTCCATCCAAATGTGGGTAA
75741 TCTTCAAAACAATCATCAAGCAGCAAAAAAATTAATCATCTCCACGACAACAAACTTGACGAACA
716 TCTTCAAAACAATCATCAAGCAGCAAAAAAATTAATCATCTCCACGACAACAAACTTGACGAACA
75806 ATATCTCAAGTATGGGCTACCGGGCAACCTCTCATCCATTCAACCTGAGCTCGGATACCAATTGT
781 ATATCTCAAGTATGGGCTACCGGGCAACCTCTCATCCATTCAACCTGAGCTCGGATACCAATTGT
75871 TGTAACCCAGATATCCCAAACTATAATCTATCAAATTCATCATGCAAGTGGAAGCAACTAAAATA
846 TGTAACCCAGATATCCCAAACTATAATCTATCAAATTCATCATGCAAGTGGAAGCAACTAAAATA
75936 A
911 A
75937 TAAATCATTCACACAAGACAGAAGAATTTACGTGGTTTGGCACTGAACTTGTCTACATCCACGGA
1 TAAATCATTCACACAAGACAGAAGAATTTACGTGGTTTGGCACTGAACTTGTCTACATCCACGGA
76002 GAAGAGAAATCCACTAGTTATAGAAAATTACATCAACACATAATTATCAATAACCCTCGCTCAAT
66 GAAGAGAAATCCACTAGTTATAGAAAATTACATCAACACATAATTATCAATAACCCTCGCTCAAT
76067 CTATCAACCCAATCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCACTCCCGCTCGG
131 CTATCAACCCAATCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCACTCCCGCTCGG
76132 TCTCTATGAGCACTCTTGCTCGGTCTCTACAAACCAATCATCACATCTATCAAAGCAAACATCAA
196 TCTCTATGAGCACTCTTGCTCGGTCTCTACAAACCAATCATCACATCTATCAAAGCAAACATCAA
76197 ACCAAACAATCTCACACACACCCATAAGGACCATCCTTTTGTCCTATGGGGTGTCTCCACCCAAA
261 ACCAAACAATCTCACACACACCCATAAGGACCATCCTTTTGTCCTATGGGGTGTCTCCACCCAAA
76262 TCTAATCCTTAGACTACATCTTTTCTCCAAGCATACAAAAAACCTATAGAGAAACTCTCTATTTA
326 TCTAATCCTTAGACTACATCTTTTCTCCAAGCATACAAAAAACCTATAGAGAAACTCTCTATTTA
76327 TACTAGCATAAACTTAGCCTCCAAGTAATCCTTTTCCTAATAGGATTCTTGTTTACCAAGTCTTT
391 TACTAGCATAAACTTAGCCTCCAAGTAATCCTTTTCCTAATAGGATTCTTGTTTACCAAGTCTTT
76392 TTGTCCACCAATCAATAGGGCTAAAAAATCCCAATCCAAATCTAATTAGGATTTGAGTCAAAATC
456 TTGTCCACCAATCAATAGGGCTAAAAAATCCCAATCCAAATCTAATTAGGATTTGAGTCAAAATC
76457 CTAACAATCTCCACCTTGACTCGAATTCCATCGAATCTTCAATCTTTAATCAATCTTCAAGGACA
521 CTAACAATCTCCACCTTGACTCGAATTCCATCGAATCTTCAATCTTTAATCAATCTTCAAGGACA
76522 TGCATGACTCCACCTACGATGAAAGTCTCACAATCTTCAAGCAATCTAATCTTGTGTGTCTTCAT
586 TGCATGACTCCACCTACGATGAAAGTCTCACAATCTTCAAGCAATCTAATCTTGTGTGTCTTCAT
76587 CTTCACTACATCATCTTCAACTTTAATTCCGAATCAAATCTTGCTTTCCATCCAAATGTGGGTAA
651 CTTCACTACATCATCTTCAACTTTAATTCCGAATCAAATCTTGCTTTCCATCCAAATGTGGGTAA
76652 TCTTCAAAACAATCATCAAGCAGCAAAAAAATTAATCATCTCCACGACAACAAACTTGACGAACA
716 TCTTCAAAACAATCATCAAGCAGCAAAAAAATTAATCATCTCCACGACAACAAACTTGACGAACA
76717 ATATCTCAAGTATGGGCTACCGGGCAACCTCTCATCCATTCAACCTGAGCTCGGATACCAATTGT
781 ATATCTCAAGTATGGGCTACCGGGCAACCTCTCATCCATTCAACCTGAGCTCGGATACCAATTGT
76782 TGTAACCCAGATATCCCAAACTATAATCTATCAAATTCATCATGCAAGTGGAAGCAACTAAAATA
846 TGTAACCCAGATATCCCAAACTATAATCTATCAAATTCATCATGCAAGTGGAAGCAACTAAAATA
76847 A
911 A
76848 TAAATCATTCACACAAGACAGAAGAATTTACGTGGTTTGGCACTGAACTTGTCTACATCCACGGA
1 TAAATCATTCACACAAGACAGAAGAATTTACGTGGTTTGGCACTGAACTTGTCTACATCCACGGA
76913 GAAGAGAAATCCACTAGTTATAGAAAATTACATCAACACATAATTATCAATAACCCTCGCTCAAT
66 GAAGAGAAATCCACTAGTTATAGAAAATTACATCAACACATAATTATCAATAACCCTCGCTCAAT
76978 CTATCAACCCAATCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCACTCCCGCTCGG
131 CTATCAACCCAATCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCACTCCCGCTCGG
77043 TCTCTATGAGCACTCTTGCTCGGTCTCTACAAACCAATCATCACATCTATCAAAGCAAACATCAA
196 TCTCTATGAGCACTCTTGCTCGGTCTCTACAAACCAATCATCACATCTATCAAAGCAAACATCAA
77108 ACCAAACAATCTCACACACACCCATAAGGACCATCCTTTTGTCCTATGGGGTGTCTCCACCCAAA
261 ACCAAACAATCTCACACACACCCATAAGGACCATCCTTTTGTCCTATGGGGTGTCTCCACCCAAA
77173 TCTAATCCTTAGACTACATCTTTTCTCCAAGCATACAAAAAACCTATAGAGAAACTCTCTATTTA
326 TCTAATCCTTAGACTACATCTTTTCTCCAAGCATACAAAAAACCTATAGAGAAACTCTCTATTTA
77238 TACTAGCATAAACTTAGCCTCCAAGTAATCCTTTTCCTAATAGGATTCTTGTTTACCAAGTCTTT
391 TACTAGCATAAACTTAGCCTCCAAGTAATCCTTTTCCTAATAGGATTCTTGTTTACCAAGTCTTT
* * *
77303 TTGTCCACCAATCAATAGGGCTAAAAAATGCCAATCCAAATATAATTAGAATTTGAGTCAAAATC
456 TTGTCCACCAATCAATAGGGCTAAAAAATCCCAATCCAAATCTAATTAGGATTTGAGTCAAAATC
77368 CTAACA
521 CTAACA
77374 GAATCTCTAT
Statistics
Matches: 1429, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
911 1429 1.00
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (911 bp):
TAAATCATTCACACAAGACAGAAGAATTTACGTGGTTTGGCACTGAACTTGTCTACATCCACGGA
GAAGAGAAATCCACTAGTTATAGAAAATTACATCAACACATAATTATCAATAACCCTCGCTCAAT
CTATCAACCCAATCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCACTCCCGCTCGG
TCTCTATGAGCACTCTTGCTCGGTCTCTACAAACCAATCATCACATCTATCAAAGCAAACATCAA
ACCAAACAATCTCACACACACCCATAAGGACCATCCTTTTGTCCTATGGGGTGTCTCCACCCAAA
TCTAATCCTTAGACTACATCTTTTCTCCAAGCATACAAAAAACCTATAGAGAAACTCTCTATTTA
TACTAGCATAAACTTAGCCTCCAAGTAATCCTTTTCCTAATAGGATTCTTGTTTACCAAGTCTTT
TTGTCCACCAATCAATAGGGCTAAAAAATCCCAATCCAAATCTAATTAGGATTTGAGTCAAAATC
CTAACAATCTCCACCTTGACTCGAATTCCATCGAATCTTCAATCTTTAATCAATCTTCAAGGACA
TGCATGACTCCACCTACGATGAAAGTCTCACAATCTTCAAGCAATCTAATCTTGTGTGTCTTCAT
CTTCACTACATCATCTTCAACTTTAATTCCGAATCAAATCTTGCTTTCCATCCAAATGTGGGTAA
TCTTCAAAACAATCATCAAGCAGCAAAAAAATTAATCATCTCCACGACAACAAACTTGACGAACA
ATATCTCAAGTATGGGCTACCGGGCAACCTCTCATCCATTCAACCTGAGCTCGGATACCAATTGT
TGTAACCCAGATATCCCAAACTATAATCTATCAAATTCATCATGCAAGTGGAAGCAACTAAAATA
A
Found at i:77056 original size:23 final size:23
Alignment explanation
Indices: 77026--77071 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
77016 CAAACAATCT
77026 TGAGCACTCCCGCTCGGTCTCTA
1 TGAGCACTCCCGCTCGGTCTCTA
**
77049 TGAGCACTCTTGCTCGGTCTCTA
1 TGAGCACTCCCGCTCGGTCTCTA
77072 CAAACCAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.13, C:0.35, G:0.22, T:0.30
Consensus pattern (23 bp):
TGAGCACTCCCGCTCGGTCTCTA
Found at i:77096 original size:21 final size:20
Alignment explanation
Indices: 77068--77106 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
77058 TTGCTCGGTC
*
77068 TCTACAAACCAATCATCACA
1 TCTACAAACCAAACATCACA
*
77088 TCTATCAAAGCAAACATCA
1 TCTA-CAAACCAAACATCA
77107 AACCAAACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.31, G:0.03, T:0.21
Consensus pattern (20 bp):
TCTACAAACCAAACATCACA
Found at i:92096 original size:13 final size:13
Alignment explanation
Indices: 92078--92124 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
92068 TTGTAACTAA
92078 AACAAAAATTAAT
1 AACAAAAATTAAT
**
92091 AACAAAAATGTACCC
1 AACAAAAAT-TA-AT
92106 AA-AAAAATTAAT
1 AACAAAAATTAAT
92118 AACAAAA
1 AACAAAA
92125 TCGATTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
12 2 0.07
13 15 0.56
14 8 0.30
15 2 0.07
ACGTcount: A:0.68, C:0.13, G:0.02, T:0.17
Consensus pattern (13 bp):
AACAAAAATTAAT
Found at i:92717 original size:75 final size:75
Alignment explanation
Indices: 92591--92743 Score: 279
Period size: 75 Copynumber: 2.0 Consensus size: 75
92581 TCCTACAATA
92591 AGTTGGGTGGTTATATTACACAAGACATAAGGGATTAGGGGCCAGTAGTTCTAACCCTTGCCATA
1 AGTTGGGTGGTTATATTACACAAGACATAAGGGATTAGGGGCCAGTAGTTCTAACCCTTGCCATA
92656 ATACCAGATG
66 ATACCAGATG
* * *
92666 AGTTGGGTGGTTATATTATACAAGACATAAGGGATTAGGGGCCGGTGGTTCTAACCCTTGCCATA
1 AGTTGGGTGGTTATATTACACAAGACATAAGGGATTAGGGGCCAGTAGTTCTAACCCTTGCCATA
92731 ATACCAGATG
66 ATACCAGATG
92741 AGT
1 AGT
92744 AGAAACTTTC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (75 bp):
AGTTGGGTGGTTATATTACACAAGACATAAGGGATTAGGGGCCAGTAGTTCTAACCCTTGCCATA
ATACCAGATG
Found at i:98389 original size:15 final size:15
Alignment explanation
Indices: 98357--98389 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
98347 TGTCGAGGGC
*
98357 TTTTTTTTTTTCCCT
1 TTTTTTTTTTTCACT
98372 TTTTTTTTTTTCA-T
1 TTTTTTTTTTTCACT
98386 TTTT
1 TTTT
98390 AAGTATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTTTTTTTCACT
Found at i:99195 original size:181 final size:181
Alignment explanation
Indices: 98885--99253 Score: 711
Period size: 181 Copynumber: 2.0 Consensus size: 181
98875 CTGAAGTCCT
*
98885 TTCGGAGCTTTGCACACGGGCTTATATCTCTTGGAGTCTTTGAGCACCTTTTGAATGTAATCGTT
1 TTCGGGGCTTTGCACACGGGCTTATATCTCTTGGAGTCTTTGAGCACCTTTTGAATGTAATCGTT
* *
98950 CTGGTGACAAAGTTTGTTAAGAGATTTGAGTATCAATTATAGATATCACCAACCCATAAGCTGTT
66 CGGGAGACAAAGTTTGTTAAGAGATTTGAGTATCAATTATAGATATCACCAACCCATAAGCTGTT
99015 GATGTCGATTCGTGCGACTTCAATATTTAAGAGGGTTCTGTCTTTGAGGTC
131 GATGTCGATTCGTGCGACTTCAATATTTAAGAGGGTTCTGTCTTTGAGGTC
99066 TTCGGGGCTTTGCACACGGGCTTATATCTCTTGGAGTCTTTGAGCACCTTTTGAATGTAATCGTT
1 TTCGGGGCTTTGCACACGGGCTTATATCTCTTGGAGTCTTTGAGCACCTTTTGAATGTAATCGTT
99131 CGGGAGACAAAGTTTGTTAAGAGATTTGAGTATCAATTATAGATATCACCAACCCATAAGCTGTT
66 CGGGAGACAAAGTTTGTTAAGAGATTTGAGTATCAATTATAGATATCACCAACCCATAAGCTGTT
99196 GATGTCGATTCGTGCGACTTCAATATTTAAGAGGGTTCTGTCTTTGAGGTC
131 GATGTCGATTCGTGCGACTTCAATATTTAAGAGGGTTCTGTCTTTGAGGTC
99247 TTCGGGG
1 TTCGGGG
99254 ACAAATTCAA
Statistics
Matches: 185, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
181 185 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (181 bp):
TTCGGGGCTTTGCACACGGGCTTATATCTCTTGGAGTCTTTGAGCACCTTTTGAATGTAATCGTT
CGGGAGACAAAGTTTGTTAAGAGATTTGAGTATCAATTATAGATATCACCAACCCATAAGCTGTT
GATGTCGATTCGTGCGACTTCAATATTTAAGAGGGTTCTGTCTTTGAGGTC
Found at i:102889 original size:11 final size:11
Alignment explanation
Indices: 102873--102906 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
102863 GAAGTTCGTG
102873 TTTTGAAGATT
1 TTTTGAAGATT
*
102884 TTTTGAAGATA
1 TTTTGAAGATT
102895 TTTTGAAGATT
1 TTTTGAAGATT
102906 T
1 T
102907 GAAGACAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (11 bp):
TTTTGAAGATT
Found at i:108061 original size:13 final size:13
Alignment explanation
Indices: 108033--108075 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
108023 GCTAGACTCA
*
108033 GACTCAAACTAACT
1 GACTCAAA-AAACT
108047 GACTCAAAAAACT
1 GACTCAAAAAACT
*
108060 GACT-GAAAAACT
1 GACTCAAAAAACT
108072 GACT
1 GACT
108076 GAACCCGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 11 0.41
13 8 0.30
14 8 0.30
ACGTcount: A:0.47, C:0.23, G:0.12, T:0.19
Consensus pattern (13 bp):
GACTCAAAAAACT
Found at i:108070 original size:12 final size:12
Alignment explanation
Indices: 108043--108078 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
108033 GACTCAAACT
*
108043 AACTGACTCAAAA
1 AACTGACT-GAAA
108056 AACTGACTGAAA
1 AACTGACTGAAA
108068 AACTGACTGAA
1 AACTGACTGAA
108079 CCCGATAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 14 0.64
13 8 0.36
ACGTcount: A:0.50, C:0.19, G:0.14, T:0.17
Consensus pattern (12 bp):
AACTGACTGAAA
Found at i:108309 original size:41 final size:41
Alignment explanation
Indices: 108252--108335 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
108242 GAAACTTGTC
*
108252 AAGTAAATGGGCCATTCCTACAGGTTGCTTATTGGTCTGTT
1 AAGTAAATGGGCCATTCCTACAGGTTGCTTATTGGTCCGTT
*
108293 AAGTAAATGGGCCATTCCTACATGTTGCTTATTGGTCCGTT
1 AAGTAAATGGGCCATTCCTACAGGTTGCTTATTGGTCCGTT
108334 AA
1 AA
108336 AGAAGAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (41 bp):
AAGTAAATGGGCCATTCCTACAGGTTGCTTATTGGTCCGTT
Found at i:109713 original size:65 final size:63
Alignment explanation
Indices: 109515--109719 Score: 180
Period size: 69 Copynumber: 3.1 Consensus size: 63
109505 GATCAACTCG
** * *
109515 GTATTAATCAGAAAAGTGGGTCTAAAAAGAAAAAAGAG-TGGGTCTTTAATGTAGCTCGACTTC
1 GTATTAATTGGAAAAGTGGGTCTAAAAA-AAAAAAGAGATGGGTCTTTCATGTATCTCGACTTC
* * * * * *
109578 CTATTATTTGGGAAAGTAGGTCTAAAAAGAGAAAAAAAGAAAAGTGGGTATTTCATGTAAT-TCG
1 GTATTAATTGGAAAAGTGGGTCT--AAA-A-AAAAAAAG-AGA-TGGGTCTTTCATGT-ATCTCG
109642 ACTTC
59 ACTTC
* * * *
109647 GTGTTAATTGTAAAAGTGGGTCTAATAAAAAAAAAGAGGATGTGTCTTTCATGTATCTCGATTTC
1 GTATTAATTGGAAAAGTGGGTCTAA-AAAAAAAAAGA-GATGGGTCTTTCATGTATCTCGACTTC
109712 GTATTAAT
1 GTATTAAT
109720 ATTAATATTA
Statistics
Matches: 110, Mismatches: 21, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
63 17 0.15
64 2 0.02
65 30 0.27
66 17 0.15
67 5 0.05
68 1 0.01
69 37 0.34
70 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (63 bp):
GTATTAATTGGAAAAGTGGGTCTAAAAAAAAAAAGAGATGGGTCTTTCATGTATCTCGACTTC
Found at i:115215 original size:22 final size:25
Alignment explanation
Indices: 115187--115231 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
115177 CCTACAGACA
115187 ATTTTTT-A-AAA-TTTGGACCTTG
1 ATTTTTTAAGAAACTTTGGACCTTG
115209 ATTTTTTAAGAAACTTTGGACCT
1 ATTTTTTAAGAAACTTTGGACCT
115232 ACTGACCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 1 0.05
24 3 0.15
25 9 0.45
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (25 bp):
ATTTTTTAAGAAACTTTGGACCTTG
Found at i:115551 original size:3 final size:3
Alignment explanation
Indices: 115543--115593 Score: 57
Period size: 3 Copynumber: 16.3 Consensus size: 3
115533 TAGTATTTTT
* * *
115543 ATA ATA ATA ATA ATA TACA ATA ATA ATA ATA ACA ATA ATA ACA ATTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
115590 ATA A
1 ATA A
115594 CTTTTCATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 36 0.90
4 4 0.10
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:115579 original size:25 final size:25
Alignment explanation
Indices: 115543--115593 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
115533 TAGTATTTTT
*
115543 ATAATAATAATAATATACAA-TAATA
1 ATAATAACAATAATA-ACAATTAATA
115568 ATAATAACAATAATAACAATTAATA
1 ATAATAACAATAATAACAATTAATA
115593 A
1 A
115594 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (25 bp):
ATAATAACAATAATAACAATTAATA
Found at i:115835 original size:31 final size:31
Alignment explanation
Indices: 115792--115897 Score: 126
Period size: 31 Copynumber: 3.5 Consensus size: 31
115782 AACTTTGAAG
*
115792 GTTTTGTACTAAATTGAGTGTTTCTTTAAAC
1 GTTTAGTACTAAATTGAGTGTTTCTTTAAAC
* *** * *
115823 GTTTAGTACTAAATT-A-AGCAACTTTGAAG
1 GTTTAGTACTAAATTGAGTGTTTCTTTAAAC
*
115852 GTTTGGTACTAAATTGAGTGTTTCTTTAAAC
1 GTTTAGTACTAAATTGAGTGTTTCTTTAAAC
115883 GTTTAGTACTAAATT
1 GTTTAGTACTAAATT
115898 AAGCAACTTA
Statistics
Matches: 58, Mismatches: 15, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
29 21 0.36
30 2 0.03
31 35 0.60
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.43
Consensus pattern (31 bp):
GTTTAGTACTAAATTGAGTGTTTCTTTAAAC
Found at i:115837 original size:60 final size:60
Alignment explanation
Indices: 115767--115906 Score: 271
Period size: 60 Copynumber: 2.3 Consensus size: 60
115757 ATTCGATGAG
*
115767 AGTACTAAATTAAGCAACTTTGAAGGTTTTGTACTAAATTGAGTGTTTCTTTAAACGTTT
1 AGTACTAAATTAAGCAACTTTGAAGGTTTGGTACTAAATTGAGTGTTTCTTTAAACGTTT
115827 AGTACTAAATTAAGCAACTTTGAAGGTTTGGTACTAAATTGAGTGTTTCTTTAAACGTTT
1 AGTACTAAATTAAGCAACTTTGAAGGTTTGGTACTAAATTGAGTGTTTCTTTAAACGTTT
115887 AGTACTAAATTAAGCAACTT
1 AGTACTAAATTAAGCAACTT
115907 AAATCCAGAC
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 79 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (60 bp):
AGTACTAAATTAAGCAACTTTGAAGGTTTGGTACTAAATTGAGTGTTTCTTTAAACGTTT
Found at i:115860 original size:29 final size:29
Alignment explanation
Indices: 115767--115906 Score: 118
Period size: 31 Copynumber: 4.7 Consensus size: 29
115757 ATTCGATGAG
115767 AGTACTAAATTAAGCAACTTTGAAGGTTT
1 AGTACTAAATTAAGCAACTTTGAAGGTTT
* * *** * *
115796 TGTACTAAATTGAGTGTTTCTTTAAACGTTT
1 AGTACTAAATT-A-AGCAACTTTGAAGGTTT
115827 AGTACTAAATTAAGCAACTTTGAAGGTTT
1 AGTACTAAATTAAGCAACTTTGAAGGTTT
* * *** * *
115856 GGTACTAAATTGAGTGTTTCTTTAAACGTTT
1 AGTACTAAATT-A-AGCAACTTTGAAGGTTT
115887 AGTACTAAATTAAGCAACTT
1 AGTACTAAATTAAGCAACTT
115907 AAATCCAGAC
Statistics
Matches: 81, Mismatches: 26, Indels: 8
0.70 0.23 0.07
Matches are distributed among these distances:
29 35 0.43
30 4 0.05
31 42 0.52
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (29 bp):
AGTACTAAATTAAGCAACTTTGAAGGTTT
Found at i:118701 original size:2 final size:2
Alignment explanation
Indices: 118696--118720 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
118686 ACCAAGCGCG
118696 CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA C
118721 GTAAAGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:121388 original size:62 final size:62
Alignment explanation
Indices: 121269--121390 Score: 142
Period size: 62 Copynumber: 2.0 Consensus size: 62
121259 ATCTCTTGCC
* * * * *
121269 GCTCAACTTCGTATTAATTGGGAAGGTGTGTCAAAAAAAAAGAAGTATGGATTTTTAATGCA
1 GCTCAACTTCGTATTAATCGGAAAAGTGGGTCAAAAAAAAAGAAGTATGGATCTTTAATGCA
*
121331 GCTCAACTTGGTATTAATCGGAAAAGTGGGTCTAAAAAACAAA-AGAGT-TGG-TCTTTAATG
1 GCTCAACTTCGTATTAATCGGAAAAGTGGGTC-AAAAAA-AAAGA-AGTATGGATCTTTAATG
121391 TAACTCGACT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
62 35 0.69
63 10 0.20
64 6 0.12
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (62 bp):
GCTCAACTTCGTATTAATCGGAAAAGTGGGTCAAAAAAAAAGAAGTATGGATCTTTAATGCA
Found at i:137573 original size:2 final size:2
Alignment explanation
Indices: 137566--137597 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
137556 ATAATATCTA
137566 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
137598 TGTTATGGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:140103 original size:31 final size:31
Alignment explanation
Indices: 140038--140194 Score: 102
Period size: 31 Copynumber: 5.4 Consensus size: 31
140028 TTTTGTGCAT
* * ** *
140038 GTGGCATGCCACGTGCCA-TTTTTGAAACAT
1 GTGGCATGCCACATGTCACTTTTTGGTACAC
140068 GTGGCATGCCACATGTCACTTTTTGGTACAC
1 GTGGCATGCCACATGTCACTTTTTGGTACAC
* * ** *
140099 GTGGCGTGACATGTGTCACTTTTTGGTATA-
1 GTGGCATGCCACATGTCACTTTTTGGTACAC
* *
140129 -T-G--TGGCAC--G--ACTTTTTGGTACAT
1 GTGGCATGCCACATGTCACTTTTTGGTACAC
*
140152 GTAG-AGTGCCACATGTCACTTTTTGGTACAC
1 GTGGCA-TGCCACATGTCACTTTTTGGTACAC
*
140183 GTGGCGTGCCAC
1 GTGGCATGCCAC
140195 GTCGGACACC
Statistics
Matches: 99, Mismatches: 17, Indels: 21
0.72 0.12 0.15
Matches are distributed among these distances:
22 12 0.12
24 2 0.02
25 1 0.01
26 4 0.04
27 5 0.05
28 1 0.01
29 2 0.02
30 16 0.16
31 56 0.57
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33
Consensus pattern (31 bp):
GTGGCATGCCACATGTCACTTTTTGGTACAC
Found at i:140187 original size:53 final size:53
Alignment explanation
Indices: 140085--140187 Score: 134
Period size: 53 Copynumber: 1.9 Consensus size: 53
140075 GCCACATGTC
* * ** * *
140085 ACTTTTTGGTACACGTGGCGTGACATGTGTCACTTTTTGGTATATGTGGCACG
1 ACTTTTTGGTACACGTAGAGTGACACATGTCACTTTTTGGTACACGTGGCACG
* *
140138 ACTTTTTGGTACATGTAGAGTGCCACATGTCACTTTTTGGTACACGTGGC
1 ACTTTTTGGTACACGTAGAGTGACACATGTCACTTTTTGGTACACGTGGC
140188 GTGCCACGTC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 42 1.00
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.37
Consensus pattern (53 bp):
ACTTTTTGGTACACGTAGAGTGACACATGTCACTTTTTGGTACACGTGGCACG
Found at i:155337 original size:14 final size:15
Alignment explanation
Indices: 155305--155338 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
155295 GGACTACTTC
*
155305 AAAAGAATAAAACTA
1 AAAAGAAGAAAACTA
*
155320 AAAAGAAGAAAATTA
1 AAAAGAAGAAAACTA
155335 AAAA
1 AAAA
155339 AAGTTCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.76, C:0.03, G:0.09, T:0.12
Consensus pattern (15 bp):
AAAAGAAGAAAACTA
Found at i:156118 original size:167 final size:166
Alignment explanation
Indices: 155735--156180 Score: 635
Period size: 167 Copynumber: 2.7 Consensus size: 166
155725 TGAGTCATTT
* *
155735 GTCAATTGAGAAATGACCAAAAAGTCTAGTTATTTAATTCCCTCAAGAATCAAAAGTTAGGACAT
1 GTCAATTGAGAAATGACCAAAAAATCTAGTTATTTAATCCCCTCAAGAATCAAAAGTTAGGACAT
* * ** * * *
155800 TTAAGTAATCTGTCAAGTAGGTAAAGACGAAAAAAAGATTAGTTCTCTAGCTCATCATCAATCTT
66 TTAAGTAATCTGTCAAGTAGGAAAAGACG-AAAAAA-ATTAGTTCTCTAACTCAAAAGCAAGCCT
* * *
155865 TGATGGGGATCTTTTATTAATTCCACCACTCTATTCAA
129 TGATAGGGATCTTTTAGTAATTCCACCACTCTATTAAA
* * * *
155903 GTCCATTGAGAAATGACAAAAAAGAT-TACTTATTTAATCCCATCAAGAATCAAAAGTTAGGACA
1 GTCAATTGAGAAATGACCAAAAA-ATCTAGTTATTTAATCCCCTCAAGAATCAAAAGTTAGGACA
*
155967 TTTAAGTAATCTGTCAAGTAGGAAAAGACGAAAAAAATAAGTTCTCTAACTCCAAAAGCAAGCCT
65 TTTAAGTAATCTGTCAAGTAGGAAAAGACGAAAAAAATTAGTTCTCTAACT-CAAAAGCAAGCCT
* *
156032 TGGTAGGGATCTTTTAGTAATTCCACTACTCTATTAAA
129 TGATAGGGATCTTTTAGTAATTCCACCACTCTATTAAA
*
156070 GTCAATTGAGAAATGACCAAAAACTCTAGTTATTTAATCCCCTCAAGAATCAAAAGTT-GGTACA
1 GTCAATTGAGAAATGACCAAAAAATCTAGTTATTTAATCCCCTCAAGAATCAAAAGTTAGG-ACA
*
156134 TTTAAGTAATCTGTCAAGTGGGAAAAGACGAAAAAAATTAGTCTCTC
65 TTTAAGTAATCTGTCAAGTAGGAAAAGACGAAAAAAATTAGT-TCTC
156181 GCTCCTCATT
Statistics
Matches: 247, Mismatches: 26, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
166 16 0.06
167 141 0.57
168 89 0.36
169 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.29
Consensus pattern (166 bp):
GTCAATTGAGAAATGACCAAAAAATCTAGTTATTTAATCCCCTCAAGAATCAAAAGTTAGGACAT
TTAAGTAATCTGTCAAGTAGGAAAAGACGAAAAAAATTAGTTCTCTAACTCAAAAGCAAGCCTTG
ATAGGGATCTTTTAGTAATTCCACCACTCTATTAAA
Found at i:156761 original size:45 final size:45
Alignment explanation
Indices: 156711--156796 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
156701 GATTACTTCT
156711 CCAGCTCATCATTAA-TCAGGGGTAGGGATCTTTTAGTAATTCCAC
1 CCAGCTCATCATTAATTC-GGGGTAGGGATCTTTTAGTAATTCCAC
*
156756 CCAGCTCGTCATTAATTCGGGGTAGGGATCTTTTAGTAATT
1 CCAGCTCATCATTAATTCGGGGTAGGGATCTTTTAGTAATT
156797 TCACTACTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
45 37 0.95
46 2 0.05
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (45 bp):
CCAGCTCATCATTAATTCGGGGTAGGGATCTTTTAGTAATTCCAC
Found at i:157241 original size:81 final size:81
Alignment explanation
Indices: 157102--157268 Score: 264
Period size: 81 Copynumber: 2.1 Consensus size: 81
157092 TAATCATGTG
* *
157102 ATTTTTAGTATTCTTCAAAGGAAATCAATATGTGGATCAAATTAGATTTCTTGGCTTTTCTATTT
1 ATTTTTAGTATTCTTCAAAGAAAATCAATATGTGGATCAAATTAGATTTCTTGCCTTTTCTATTT
157167 GAAAGCTCCAAATCCC
66 GAAAGCTCCAAATCCC
* *
157183 ATTTTTATTTTTCTTCAAAGAAAATCAATATGTGGATCAAATTAGATTTCTTGCCTTTTCTATTT
1 ATTTTTAGTATTCTTCAAAGAAAATCAATATGTGGATCAAATTAGATTTCTTGCCTTTTCTATTT
** *
157248 GAAATTTCCAAATTCC
66 GAAAGCTCCAAATCCC
157264 -TTTTT
1 ATTTTT
157269 CCCCTATGCT
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 5 0.06
81 74 0.94
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (81 bp):
ATTTTTAGTATTCTTCAAAGAAAATCAATATGTGGATCAAATTAGATTTCTTGCCTTTTCTATTT
GAAAGCTCCAAATCCC
Found at i:157878 original size:13 final size:13
Alignment explanation
Indices: 157849--157877 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
157839 TGTAAAGCTC
157849 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
157862 TTTTCTTTTT-TT
1 TTTTCTTTTTCTT
157874 TTTT
1 TTTT
157878 TTCGCATACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTCTTTTTCTT
Found at i:159506 original size:12 final size:12
Alignment explanation
Indices: 159489--159513 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
159479 GCTCTTATTA
159489 TGTTCTTTTCCC
1 TGTTCTTTTCCC
159501 TGTTCTTTTCCC
1 TGTTCTTTTCCC
159513 T
1 T
159514 TTTGCCTGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.08, T:0.60
Consensus pattern (12 bp):
TGTTCTTTTCCC
Found at i:160460 original size:2 final size:2
Alignment explanation
Indices: 160449--160487 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
160439 TAGAAAAGTT
160449 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
160488 GCTTTAGTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:163523 original size:59 final size:61
Alignment explanation
Indices: 163424--163539 Score: 164
Period size: 59 Copynumber: 1.9 Consensus size: 61
163414 TACTCTGATA
**
163424 TTTTTGGAACTTTGTTGGTTCTGATACAAATTAGACCATAATCGAAATCAATTGTCATTGTC
1 TTTTTGGAACTTTGTT-GTTCTGATACAAATTAGACCATAAAAGAAATCAATTGTCATTGTC
* **
163486 TTTTTGGAACTTTGTT-TT-TGATATATGTTAGACCATAAAAGAAATCAATTGTCA
1 TTTTTGGAACTTTGTTGTTCTGATACAAATTAGACCATAAAAGAAATCAATTGTCA
163540 CCGCTTTTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 31 0.63
60 2 0.04
62 16 0.33
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (61 bp):
TTTTTGGAACTTTGTTGTTCTGATACAAATTAGACCATAAAAGAAATCAATTGTCATTGTC
Done.