Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011272.1 Corchorus capsularis cultivar CVL-1 contig11293, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26295

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4535--4578
3
14.7
3
100
0
88
65
0
0
34
0.93
4599--4631
10
3.4
10
91
4
50
81
0
18
0
0.68
23306--23661
178
2.0
181
90
4
560
48
13
11
26
1.77
24300--24340
2
20.0
2
85
5
55
46
4
2
46
1.37
24333--24366
11
3.2
10
88
12
50
67
0
0
32
0.91
24395--24456
30
2.0
30
87
3
88
35
14
4
45
1.66
24577--24671
37
2.6
36
80
8
111
15
16
11
55
1.68
24918--25123
22
9.3
22
70
10
96
34
10
16
37
1.84
24950--25046
44
2.2
44
88
3
142
37
14
14
34
1.87
24969--25069
44
2.3
44
84
3
132
36
15
13
33
1.88
25361--25554
44
4.4
45
76
6
193
43
8
13
34
1.75
25382--25529
66
2.2
66
80
2
163
40
9
14
35
1.79
25363--25529
22
7.6
22
77
4
142
41
8
13
35
1.76
25635--25684
20
2.5
20
90
0
73
46
8
16
30
1.75
25741--26196
22
20.6
22
70
10
232
38
10
17
34
1.83

Tables:   1

The End!