genome.fa.s11273.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011273.1 Corchorus capsularis cultivar CVL-1 contig11294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82932

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6855--6883	13	2.1	14	93	6	51	41	0	13	44	1.44
11320--11348	13	2.1	14	93	6	51	41	0	13	44	1.44
16223--16259	2	18.5	2	89	10	58	48	0	2	48	1.15
17997--18075	29	2.6	30	70	22	76	40	27	12	18	1.87
21359--21400	21	2.0	21	95	0	75	45	19	0	35	1.50
23026--23174	31	4.9	31	81	3	149	18	20	24	36	1.94
23026--23174	60	2.4	58	76	13	138	18	20	24	36	1.94
28695--28720	12	2.2	12	100	0	52	57	7	0	34	1.27
34725--34777	27	2.0	27	100	0	106	37	24	3	33	1.74
37738--37770	17	1.9	17	93	0	57	15	15	9	60	1.58
38071--38209	72	1.9	72	98	0	269	43	35	5	15	1.70
38319--38446	63	2.0	63	98	0	247	29	34	11	24	1.91
38922--39092	89	1.9	92	84	6	233	33	18	9	38	1.84
42533--42591	26	2.3	26	100	0	118	16	3	22	57	1.54
42778--42815	14	2.6	15	87	8	60	28	47	15	7	1.74
44017--44057	20	2.0	21	85	4	57	21	17	24	36	1.94
44047--44129	42	2.0	43	85	2	114	37	21	16	24	1.94
45576--45628	27	2.0	27	82	7	65	41	7	1	49	1.42
52318--52349	12	2.7	12	95	0	55	56	6	28	9	1.55
58682--58712	6	5.2	6	96	0	53	19	45	16	19	1.86
61750--61788	9	4.8	8	84	15	53	38	0	2	58	1.12
63245--63286	18	2.3	18	95	0	75	16	30	33	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63540--63591	18	2.9	18	94	0	95	23	36	15	25	1.93
67080--67319	78	3.1	78	90	1	381	47	0	13	37	1.49
67417--67459	10	4.2	10	86	13	61	48	0	18	32	1.48
67415--67459	6	8.3	6	81	18	55	48	0	17	33	1.48
67415--67459	16	2.9	16	90	3	65	48	0	17	33	1.48
78913--78963	23	2.2	24	85	3	68	62	17	19	0	1.32
80894--80940	20	2.3	21	79	17	55	23	34	6	36	1.80
80909--80947	20	2.0	20	89	0	60	17	43	7	30	1.77
81216--81254	20	2.0	20	94	0	69	56	5	0	38	1.22
81475--81527	25	2.2	24	80	9	63	35	0	32	32	1.58

Tables:   1

The End!