Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011274.1 Corchorus capsularis cultivar CVL-1 contig11295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3160
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:1673 original size:15 final size:16

Alignment explanation


    Indices: 1655--1684  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1645 TTCGGGTTTG

                            
       1655 GGTA-TTTTGGGTTCA
          1 GGTATTTTTGGGTTCA

                           
       1670 GGTATTTTTGGGTTC
          1 GGTATTTTTGGGTTC

       1685 GGGCTTGAAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    4  0.29
  16   10  0.71

ACGTcount: A:0.10, C:0.07, G:0.33, T:0.50


Consensus pattern (16 bp):   
GGTATTTTTGGGTTCA

Found at i:1867 original size:22 final size:21

Alignment explanation


    Indices: 1842--1891  Score: 55
    Period size: 22  Copynumber: 2.3  Consensus size: 21

       1832 TAAGTTTATT

                               *  
       1842 GATAATTATAATAATATAATAA
          1 GATAATTAT-ATAATATAACAA

                  *              *
       1864 GATAGAGTATATAATATAACAT
          1 GATA-ATTATATAATATAACAA

                  
       1886 GATAAT
          1 GATAAT

       1892 CAATATATTC


Statistics
Matches: 23,  Mismatches: 4, Indels: 3
        0.77            0.13        0.10

Matches are distributed among these distances:
  21    1  0.04
  22   18  0.78
  23    4  0.17

ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34


Consensus pattern (21 bp):   
GATAATTATATAATATAACAA
Done.