Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011276.1 Corchorus capsularis cultivar CVL-1 contig11297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70406

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1649--1684
19
1.9
19
88
5
56
25
33
16
25
1.96
3807--3979
86
2.0
86
96
0
319
36
20
13
28
1.91
7353--7527
92
1.9
92
98
0
341
35
10
12
41
1.77
12377--12518
67
2.1
66
79
8
144
26
9
23
39
1.86
12660--12714
26
2.1
26
83
6
67
32
21
7
38
1.81
12802--12851
16
3.1
16
88
0
82
14
22
16
48
1.81
18387--18416
14
2.1
14
100
0
60
43
13
6
36
1.70
21379--21448
29
2.4
29
83
7
79
21
21
15
41
1.90
21579--21656
29
2.7
29
81
2
102
39
16
26
16
1.90
23478--23956
167
2.9
165
84
2
645
29
15
16
37
1.90
27691--27742
26
2.0
26
92
7
88
34
5
21
38
1.77
30344--30371
1
28.0
1
100
0
56
0
0
0
100
0.00
34291--34489
57
3.5
57
96
0
362
55
17
10
16
1.68
34351--34499
27
5.3
26
67
26
81
54
17
10
17
1.70
36828--36855
14
2.0
14
100
0
56
21
35
21
21
1.96
38087--38122
2
19.0
2
88
11
58
50
0
0
50
1.00
39061--39091
6
5.3
6
96
3
55
51
12
0
35
1.40
40461--40492
11
2.9
11
90
0
55
43
18
0
37
1.51
45809--45925
60
2.0
60
89
3
182
36
10
21
31
1.87
48276--48398
61
2.0
61
96
0
228
50
21
5
21
1.69
55506--55534
2
14.5
2
100
0
58
48
0
0
51
1.00
58852--58884
12
2.8
12
90
4
50
0
21
0
78
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66437--66479
21
2.0
22
90
4
70
60
4
4
30
1.37
69320--69361
2
20.5
2
85
4
57
47
4
2
45
1.36
69390--69454
31
2.1
31
94
2
114
29
18
3
49
1.63
69390--69462
31
2.4
31
90
4
103
30
16
4
49
1.64
70010--70061
21
2.4
21
87
6
68
36
11
19
32
1.87
69893--70266
22
16.6
22
68
13
122
36
10
16
36
1.83

Tables:   1

The End!