Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011277.1 Corchorus capsularis cultivar CVL-1 contig11298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9051

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1160--1230
25
2.8
25
71
16
65
19
16
36
26
1.94
1303--1364
23
2.7
23
82
5
81
14
19
45
20
1.85
2746--2779
16
2.1
16
88
0
50
58
26
8
5
1.51
2754--2795
22
1.9
22
85
0
57
52
30
9
7
1.61
2971--3032
26
2.4
26
91
0
106
43
27
8
20
1.80
2971--3063
26
3.2
29
81
11
102
43
30
7
19
1.78
4353--4429
22
3.5
21
77
19
77
45
9
12
32
1.74
4353--4444
22
4.2
21
74
20
73
47
8
13
30
1.72
4481--4547
19
3.5
19
83
2
89
23
20
11
43
1.85
4651--4858
22
9.4
22
73
6
143
34
14
9
41
1.77
4885--4995
22
5.1
22
72
15
79
38
16
8
36
1.78
5060--5196
22
6.1
22
80
8
82
37
18
10
33
1.86
5067--5177
46
2.5
44
79
10
109
36
18
10
34
1.85
5182--5240
22
2.7
22
81
0
73
37
8
13
40
1.75
5514--5584
31
2.3
31
87
2
97
52
4
15
28
1.61
7845--7878
3
11.3
3
87
12
52
32
0
0
67
0.91

Tables:   1

The End!