Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011284.1 Corchorus capsularis cultivar CVL-1 contig11305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33021

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6673--6721
2
24.5
2
83
8
64
46
2
4
46
1.33
6664--6721
13
4.2
14
80
10
66
48
3
3
44
1.36
13551--13592
19
2.2
19
86
4
57
19
7
21
52
1.69
13561--13597
19
2.0
19
94
5
67
16
5
21
56
1.59
17113--17144
2
16.5
2
93
6
57
50
0
0
50
1.00
18863--18902
3
13.3
3
100
0
80
67
0
0
32
0.91
19861--19906
17
2.7
18
73
10
51
63
6
6
23
1.43
19861--19906
15
2.7
17
77
16
51
63
6
6
23
1.43
26916--26956
18
2.3
18
100
0
82
36
0
24
39
1.56
27504--27561
28
2.1
28
100
0
116
36
6
3
53
1.45
27735--27776
22
1.9
22
90
0
66
52
11
7
28
1.64
28005--28043
2
19.5
2
94
0
69
48
0
2
48
1.15
29178--29205
13
2.2
13
100
0
56
42
0
7
50
1.30
32209--32241
6
5.5
6
100
0
66
54
15
0
30
1.41
32238--32282
13
3.5
13
90
3
74
55
8
13
22
1.65
32238--32290
25
2.1
25
89
6
81
58
9
11
20
1.60

Tables:   1

The End!