genome.fa.s11290.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011290.1 Corchorus capsularis cultivar CVL-1 contig11311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53169

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2099--2142	23	1.9	23	95	0	79	31	22	13	31	1.93
3713--3759	20	2.3	20	88	3	67	8	25	2	63	1.34
3831--4087	21	12.6	21	72	17	213	21	22	4	50	1.67
3882--4037	35	4.1	36	77	14	145	21	23	5	50	1.69
3916--4084	22	8.1	22	76	12	151	20	23	4	51	1.66
3981--4051	37	1.9	37	83	8	92	19	22	4	53	1.62
4171--4197	14	1.9	14	100	0	54	7	14	3	74	1.18
4158--4233	36	2.1	37	92	5	127	13	17	5	64	1.45
4116--4232	16	7.3	16	67	19	57	15	19	7	57	1.62
4203--4264	9	7.1	9	85	7	92	11	22	1	64	1.34
4169--4233	16	3.8	16	71	28	62	13	18	4	63	1.47
4287--4513	53	4.5	52	83	9	260	26	18	11	43	1.84
9231--9277	23	2.0	23	95	0	85	31	21	14	31	1.94
12050--12241	103	1.9	103	94	1	321	33	17	18	31	1.94
21667--21702	17	2.1	17	94	0	63	30	16	22	30	1.96
23999--24082	38	2.1	40	91	6	136	17	8	13	60	1.56
24178--24248	29	2.4	30	80	19	96	32	16	9	40	1.82
24178--24250	32	2.5	32	85	14	104	32	16	9	41	1.81
24177--24259	29	2.9	27	78	16	87	33	14	10	40	1.81
25140--25249	31	3.5	31	87	3	159	30	26	26	17	1.97
29039--29103	30	2.1	31	91	2	105	27	18	4	49	1.67
29338--29570	22	10.5	23	75	12	132	41	9	14	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29377--29564	44	4.3	43	75	6	157	41	9	14	35	1.77
29398--29545	66	2.2	66	80	2	163	39	10	14	35	1.80
29818--29920	25	4.5	23	76	10	79	42	7	11	37	1.70
30019--30099	22	3.7	22	75	15	87	35	12	14	37	1.84
29671--30203	22	24.4	22	65	19	84	40	9	13	36	1.77
37659--37683	9	2.8	9	100	0	50	0	68	0	32	0.90
38823--38980	32	5.0	32	75	14	123	18	26	18	36	1.94
45890--45918	14	2.0	15	93	6	51	0	24	6	68	1.13
47982--48520	270	2.0	269	91	2	881	35	14	15	34	1.89
52825--52849	12	2.1	12	100	0	50	24	0	28	48	1.52

Tables:   1

The End!