Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011293.1 Corchorus capsularis cultivar CVL-1 contig11314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4448

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
142--181
14
2.9
14
84
0
53
52
2
22
22
1.59
163--283
35
3.4
36
80
10
115
57
2
22
18
1.52
114--360
121
2.0
120
80
7
268
55
3
21
19
1.58
288--360
35
2.3
33
80
17
75
57
5
16
20
1.59
344--508
22
7.6
22
71
16
103
52
6
20
20
1.69
339--456
21
5.5
21
77
11
80
51
6
20
21
1.70
467--608
35
4.0
35
87
2
203
51
8
20
19
1.72
467--608
71
2.0
71
90
0
221
51
8
20
19
1.72
520--560
14
2.9
14
81
3
55
53
4
19
21
1.63
580--790
21
9.5
21
70
13
104
54
7
18
19
1.67
686--732
23
2.1
22
92
4
76
61
2
14
21
1.43
2403--2442
2
19.5
2
89
5
62
47
5
0
47
1.24
2466--2535
31
2.2
32
85
7
90
28
14
4
52
1.60
2717--2754
19
2.0
20
85
15
53
28
5
2
63
1.30
2920--3116
22
9.0
21
75
12
139
34
10
16
39
1.83
2964--3070
44
2.4
44
87
3
153
33
12
16
37
1.86
2922--3124
112
1.8
109
80
9
241
33
9
17
38
1.83
3224--3289
22
3.0
22
80
6
73
36
6
19
37
1.77
3394--3565
22
7.8
22
70
13
95
42
9
13
34
1.76
3375--3541
22
7.6
22
72
7
126
42
8
13
35
1.75
3375--3541
66
2.5
66
74
15
157
42
8
13
35
1.75
3647--3694
19
2.5
19
96
3
87
47
10
16
25
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3618--4246
22
29.0
22
70
13
175
38
10
15
35
1.82
3854--3938
23
3.7
23
84
1
100
41
7
12
38
1.71
3999--4106
45
2.4
45
79
8
105
32
11
17
38
1.85
4261--4304
22
2.0
22
86
8
63
43
4
13
38
1.65

Tables:   1

The End!