Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011296.1 Corchorus capsularis cultivar CVL-1 contig11317, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5351
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33


Found at i:342 original size:15 final size:15

Alignment explanation


    Indices: 322--351  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        312 CATCAGAATT

                           
        322 TAGATTCCACAACGA
          1 TAGATTCCACAACGA

                           
        337 TAGATTCCACAACGA
          1 TAGATTCCACAACGA

        352 CTGACGGTGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20


Consensus pattern (15 bp):   
TAGATTCCACAACGA
Done.