Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011298.1 Corchorus capsularis cultivar CVL-1 contig11319, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5614
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32


Found at i:5099 original size:4 final size:4

Alignment explanation


    Indices: 5090--5130  Score: 82
    Period size: 4  Copynumber: 10.2  Consensus size: 4

       5080 TCAGGGTGTA

                                                               
       5090 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T
          1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T

       5131 GTGTGTATAT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   37  1.00

ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51


Consensus pattern (4 bp):   
TATG

Done.