Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001130.1 Corchorus capsularis cultivar CVL-1 contig01130, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2209
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.39


Found at i:1599 original size:23 final size:21

Alignment explanation


    Indices: 1556--1600  Score: 54
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1546 GCATATTTAT

                   *        *    
       1556 ATCCAAATATAAATGTCATGA
          1 ATCCAAAAATAAATGTAATGA

                                   
       1577 ATCCAAAAATTAAATTGTAATGA
          1 ATCCAAAAA-TAAA-TGTAATGA

             
       1600 A
          1 A

       1601 AAATAAATGT


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  21    8  0.40
  22    4  0.20
  23    8  0.40

ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29


Consensus pattern (21 bp):   
ATCCAAAAATAAATGTAATGA

Found at i:1802 original size:3 final size:3

Alignment explanation


    Indices: 1794--1838  Score: 90
    Period size: 3  Copynumber: 15.0  Consensus size: 3

       1784 GTACATATAT

                                                                       
       1794 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

       1839 TACTGCCAAT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   42  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
ATA

Done.