Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011303.1 Corchorus capsularis cultivar CVL-1 contig11324, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20141
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:17583 original size:36 final size:37

Alignment explanation


    Indices: 17533--17606  Score: 114
    Period size: 37  Copynumber: 2.0  Consensus size: 37

      17523 CCCGTACCGC

                                                 
      17533 ACATAGCTAACAAACA-ATTACAATCAAATTTAATTA
          1 ACATAGCTAACAAACATATTACAATCAAATTTAATTA

                  *  *                       *   
      17569 ACATAGTTAGCAAACATATTACAATCAAATTTAGTTA
          1 ACATAGCTAACAAACATATTACAATCAAATTTAATTA

             
      17606 A
          1 A

      17607 GCTACAAGCA


Statistics
Matches: 34,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  36   14  0.41
  37   20  0.59

ACGTcount: A:0.50, C:0.15, G:0.05, T:0.30


Consensus pattern (37 bp):   
ACATAGCTAACAAACATATTACAATCAAATTTAATTA

Done.