Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011310.1 Corchorus capsularis cultivar CVL-1 contig11331, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44709

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
819--1066
78
3.2
78
90
2
381
37
13
1
48
1.50
1767--1999
70
3.2
70
81
10
279
37
12
0
49
1.44
1767--2005
78
3.2
77
88
7
332
37
12
0
49
1.43
2733--2899
87
1.9
88
92
1
282
34
14
2
47
1.58
3092--3139
24
2.0
24
88
4
71
8
20
2
68
1.26
5254--5286
2
17.0
2
87
6
50
45
0
3
51
1.16
6146--6281
68
2.0
68
90
7
215
40
18
10
30
1.84
7303--7338
18
1.9
19
88
5
56
30
11
16
41
1.83
10299--10407
57
1.9
57
86
0
155
36
19
20
23
1.95
24489--24829
173
2.0
175
80
6
399
31
14
15
38
1.87
27570--27660
40
2.3
39
83
9
105
23
26
16
34
1.95
27747--27786
17
2.4
16
87
4
53
5
10
5
80
1.02
30559--30606
20
2.5
19
76
6
51
6
16
6
70
1.28
31163--31193
14
2.2
14
100
0
62
35
16
12
35
1.87
32417--32452
2
18.0
2
100
0
72
50
0
0
50
1.00
33005--33052
25
2.0
24
92
8
80
37
29
25
8
1.85
33939--33965
2
13.5
2
100
0
54
48
0
0
51
1.00
38330--38374
2
23.0
2
86
4
65
46
2
2
48
1.26
38313--38366
21
2.6
21
90
0
81
42
3
3
50
1.38
39177--39348
31
5.5
31
79
0
146
34
23
23
18
1.96
39177--39305
62
2.1
62
85
0
168
35
24
24
16
1.95

Tables:   1

The End!