genome.fa.s11314.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011314.1 Corchorus capsularis cultivar CVL-1 contig11335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174694

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2990--3028	19	2.1	19	100	0	78	30	25	5	38	1.78
3573--3611	20	2.0	20	94	0	69	41	17	10	30	1.83
23877--23922	22	2.1	22	100	0	92	26	0	13	60	1.32
29014--29582	47	12.3	47	81	8	467	35	19	24	19	1.95
29034--29581	94	5.9	94	80	8	536	35	19	25	20	1.96
29296--29363	34	2.0	34	100	0	136	35	20	23	20	1.96
29251--29410	81	2.0	81	91	0	257	35	20	24	20	1.96
29159--29508	175	2.0	177	88	2	517	35	19	25	20	1.95
29697--29994	71	4.2	70	88	3	402	30	16	26	26	1.97
29701--29994	141	2.1	140	86	2	410	31	17	25	25	1.97
30527--30673	50	2.9	50	88	0	213	38	14	15	30	1.88
31702--31758	1	57.0	1	78	0	51	1	10	0	87	0.61
31690--31758	13	4.9	13	79	13	66	1	13	0	85	0.66
31689--31758	21	3.2	23	78	13	85	1	14	0	84	0.70
31689--31759	23	3.0	24	86	10	94	1	15	0	83	0.73
31692--31759	34	2.0	34	82	5	84	1	14	0	83	0.71
31689--31759	12	6.1	11	78	18	65	1	15	0	83	0.73
36561--37149	292	2.0	293	96	1	1090	35	14	17	32	1.90
37196--37253	27	2.1	28	93	3	100	48	8	20	22	1.77
37226--38397	36	31.7	36	80	10	597	45	9	19	24	1.81
37222--38397	182	6.4	182	70	16	554	45	9	19	24	1.81
37528--37765	41	5.9	41	91	2	372	45	11	20	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37528--37740	80	2.6	82	91	3	367	46	11	20	21	1.82
37528--38699	121	10.3	123	75	16	451	46	10	19	23	1.81
37804--37869	21	3.4	21	64	23	54	54	12	10	22	1.68
37925--38088	74	2.2	74	91	2	258	43	9	21	25	1.82
38382--38699	41	7.9	41	88	4	475	47	10	20	21	1.80
38382--38699	80	3.9	82	87	4	475	47	10	20	21	1.80
38706--38804	36	2.8	36	93	1	173	51	13	11	24	1.73
38738--38803	21	3.4	21	66	23	63	54	12	12	21	1.69
38670--38840	36	4.8	35	82	9	161	49	12	14	23	1.77
38850--39022	37	4.7	37	93	1	276	43	7	21	27	1.79
38918--38978	19	3.3	19	65	21	56	45	4	26	22	1.72
38937--38996	18	3.3	18	65	21	52	43	5	25	26	1.75
39015--39201	36	5.2	37	92	1	258	40	9	20	29	1.84
58210--58287	33	2.3	33	91	2	120	37	8	19	34	1.83
58226--58297	33	2.2	33	92	5	119	31	6	22	38	1.81
58777--58814	18	2.1	19	90	5	60	28	13	39	18	1.88
59732--59827	48	2.0	48	95	0	174	36	12	18	32	1.89
64842--64870	2	14.5	2	100	0	58	51	0	0	48	1.00
65084--65127	9	5.2	9	84	13	58	50	0	2	47	1.13
65087--65127	2	22.0	2	80	14	52	48	0	2	48	1.14
67512--67571	31	1.9	31	96	0	111	25	30	5	40	1.77
68002--68040	16	2.5	16	83	4	53	10	12	35	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72044--72073	15	2.0	15	100	0	60	33	6	13	46	1.69
72557--72595	16	2.4	16	86	4	51	84	0	10	5	0.76
73875--73974	30	3.3	30	92	1	164	11	35	10	44	1.73
78168--78242	16	4.8	16	77	6	73	38	32	16	13	1.87
78139--78246	32	3.4	32	76	12	91	37	35	16	11	1.84
78166--78245	30	2.6	30	86	4	97	37	33	16	12	1.86
78257--78301	22	2.0	23	86	4	65	42	24	15	17	1.88
78818--78879	32	1.9	32	83	0	79	33	40	16	9	1.81
78828--78909	16	5.2	16	70	2	67	35	34	18	12	1.88
82066--82097	12	2.7	12	100	0	64	34	31	9	25	1.87
85171--85202	11	2.9	11	100	0	64	34	0	18	46	1.49
94028--94060	16	2.1	16	94	0	57	24	18	15	42	1.88
96765--96797	9	3.7	9	95	0	57	45	0	9	45	1.35
99640--99670	11	2.8	11	90	0	53	32	9	22	35	1.87
102812--103061	88	2.8	85	83	7	304	49	8	7	35	1.61
102787--103094	29	10.6	28	78	10	273	49	8	7	34	1.60
102787--103138	58	6.0	59	75	10	235	48	8	8	35	1.63
106125--106268	68	2.2	64	91	5	225	22	20	6	50	1.72
106241--106282	9	4.7	9	93	0	75	11	28	0	59	1.33
106310--107054	53	14.1	53	91	0	1150	26	18	8	46	1.79
111978--112010	11	3.1	11	91	8	59	27	18	0	54	1.44
112063--112105	13	3.2	13	90	3	59	65	2	13	18	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112071--112108	14	2.8	14	92	4	60	60	0	18	21	1.36
116538--116630	47	2.0	47	85	4	125	30	30	19	20	1.97
126397--126637	63	4.0	62	82	10	277	42	15	19	22	1.89
126505--126540	17	2.1	17	89	0	54	52	5	16	25	1.65
126477--126712	65	3.8	61	75	16	200	44	16	16	22	1.87
126843--126933	33	2.6	34	76	15	89	46	16	13	24	1.82
126970--127111	38	3.8	37	81	3	158	50	11	10	28	1.71
127218--127674	168	2.7	166	89	3	682	33	17	19	29	1.95
127640--127693	19	2.8	19	82	0	81	40	11	9	38	1.73
128115--128241	36	3.5	36	91	1	200	38	28	15	17	1.90
128231--128515	70	4.1	70	87	1	392	35	20	20	24	1.96
128464--128610	49	3.0	49	85	5	206	36	22	19	22	1.95
128633--128879	35	7.0	35	87	2	316	41	21	19	18	1.90
129967--130015	20	2.5	20	86	6	64	2	18	0	79	0.83
129979--130022	20	2.2	20	83	0	52	2	20	0	77	0.88
131157--131221	30	2.2	30	94	0	112	7	26	44	21	1.79
133107--133244	33	4.2	33	93	0	222	43	16	10	29	1.81
133107--133281	66	2.7	66	85	1	199	41	17	10	30	1.83
135775--135839	30	2.2	30	91	0	103	9	26	43	21	1.82
136596--136635	19	2.1	19	85	0	53	42	17	20	20	1.89
138924--138983	7	8.6	7	80	8	61	80	0	1	18	0.80
138924--138983	15	4.3	14	79	10	61	80	0	1	18	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138930--138983	22	2.5	20	82	11	63	79	0	1	18	0.82
139181--139237	13	4.3	13	80	8	62	40	14	8	36	1.76
139296--139331	11	3.3	11	88	0	54	8	13	0	77	0.98
139300--139338	11	3.6	11	89	3	53	5	15	0	79	0.90
142355--142389	16	2.1	17	89	5	54	2	17	0	80	0.84
143683--143723	20	2.0	22	85	9	59	48	0	2	48	1.14
147573--147646	27	2.8	26	85	4	94	44	24	13	17	1.85
150675--150746	27	2.7	27	78	4	83	16	13	26	43	1.86
150887--151004	59	2.0	59	98	0	227	27	12	15	44	1.82
151896--151952	30	1.9	30	85	7	80	31	17	26	24	1.97
160720--160783	30	2.1	30	85	5	85	25	31	31	12	1.92
161907--161955	25	2.1	24	85	11	66	69	4	20	6	1.27
165056--165143	33	2.7	33	92	0	149	30	13	17	38	1.88

Tables:   1

The End!