Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011316.1 Corchorus capsularis cultivar CVL-1 contig11337, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9817

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
338--393
28
2.0
28
92
0
94
37
10
28
23
1.88
4344--4405
31
2.0
31
93
0
106
30
17
3
48
1.63
4615--4652
19
2.0
20
85
15
53
28
5
2
63
1.30
4818--4942
22
5.7
22
66
20
73
38
8
14
39
1.75
4820--4942
44
2.8
44
82
10
144
39
8
13
39
1.75
4883--5000
22
5.3
22
76
6
85
30
7
19
42
1.79
5036--5175
22
6.4
22
69
17
78
38
7
17
37
1.77
5321--5426
22
4.8
22
76
4
106
43
9
12
34
1.75
5695--5765
23
2.9
25
81
10
76
43
7
14
35
1.72
5727--5941
22
9.7
22
70
16
97
35
11
14
38
1.82
5856--5941
45
1.9
45
85
4
120
34
11
15
38
1.83
7650--7699
25
2.0
25
100
0
100
52
8
16
24
1.70

Tables:   1

The End!