Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011317.1 Corchorus capsularis cultivar CVL-1 contig11338, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58139

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7840--9048
621
1.9
620
93
1
2064
32
13
16
37
1.88
11039--11097
31
1.9
31
85
0
82
44
5
18
32
1.72
12251--12291
20
2.0
20
85
0
55
7
9
12
70
1.33
15556--15594
12
3.3
12
85
3
53
79
12
7
0
0.93
15558--15593
17
2.2
16
90
5
54
77
13
8
0
0.98
16136--16167
6
5.5
6
92
7
57
34
15
0
50
1.45
19877--19971
31
3.1
30
76
8
86
33
16
9
40
1.81
20530--20561
11
2.9
11
95
0
55
46
9
3
40
1.52
21643--21676
7
4.7
7
92
7
59
88
0
0
11
0.52
21642--21676
15
2.3
15
100
0
70
88
0
0
11
0.51
23154--23179
1
26.0
1
100
0
52
0
0
0
100
0.00
26273--26307
16
2.2
16
94
0
61
45
8
8
37
1.65
28794--28837
22
2.0
22
95
0
79
15
22
38
22
1.92
28973--29039
22
3.0
22
74
8
71
17
20
34
26
1.96
29227--29314
45
2.0
43
84
8
115
26
17
27
29
1.97
33050--33824
386
2.0
386
100
0
1550
29
21
19
29
1.98
34232--34353
42
2.9
42
90
0
190
26
26
17
30
1.97
34961--35003
20
2.1
21
86
4
61
18
37
9
34
1.83
35082--35134
25
2.2
25
90
6
83
32
18
0
49
1.48
35142--35209
26
2.6
26
90
0
109
54
10
1
33
1.43
37541--37637
33
2.9
33
84
3
97
10
28
38
22
1.87
38219--38268
20
2.5
20
86
0
73
18
22
20
40
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43527--43563
17
2.2
17
90
0
56
40
8
13
37
1.74
43769--43874
35
3.0
35
76
9
115
50
4
20
24
1.68
43908--44080
20
8.8
19
74
16
140
53
5
19
21
1.66
43945--43984
14
2.9
14
84
0
53
52
5
20
22
1.65
44062--44096
15
2.4
15
90
4
54
57
8
17
17
1.64
44186--44224
19
2.1
19
85
0
51
53
5
25
15
1.62
44228--44369
21
7.0
21
69
7
87
52
2
23
21
1.60
44193--44384
60
3.2
60
87
2
262
52
3
25
19
1.61
44373--44437
7
9.4
7
73
15
55
55
3
23
18
1.56
44337--44437
48
2.1
48
84
0
130
54
1
24
18
1.54
44387--44468
34
2.4
34
82
13
105
53
3
21
20
1.61
44352--44444
48
1.9
48
88
0
141
54
3
21
20
1.58
46815--46966
75
2.0
75
85
0
205
38
10
21
28
1.87
47351--47414
8
7.9
8
75
19
53
75
0
25
0
0.81
47327--47412
17
4.7
18
74
20
72
76
0
20
2
0.89
47327--47404
10
7.6
9
75
22
57
78
0
19
2
0.87
47354--47414
20
3.0
20
85
9
79
75
0
24
0
0.80
47352--47413
10
6.4
9
82
14
63
77
0
22
0
0.77
48015--48065
10
4.8
10
79
13
57
82
1
15
0
0.76
48011--48059
12
4.1
12
86
7
57
81
2
16
0
0.78
48676--48729
12
4.7
12
84
6
76
81
0
16
1
0.78
48676--48729
11
4.7
11
86
6
72
81
0
16
1
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48674--48729
23
2.4
23
84
0
85
82
0
16
1
0.76
49011--49092
41
2.0
41
90
0
128
34
15
15
34
1.90
49603--50104
70
7.2
69
89
3
692
26
27
18
27
1.98
52018--52049
2
16.0
2
93
0
55
46
0
0
53
1.00
53938--54180
51
4.9
49
75
12
169
41
4
16
36
1.70
54885--55166
41
6.9
41
82
2
318
13
26
20
39
1.90
55177--55517
50
6.9
50
87
3
438
17
27
18
37
1.92

Tables:   1

The End!