Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011318.1 Corchorus capsularis cultivar CVL-1 contig11339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14908

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--175
20
8.8
19
73
16
131
52
6
19
21
1.68
84--175
39
2.3
41
86
5
143
47
7
21
22
1.76
157--193
15
2.6
14
87
8
56
54
8
21
16
1.68
279--317
19
2.1
19
85
0
51
53
5
25
15
1.62
321--437
21
5.8
21
71
7
73
52
3
23
20
1.61
286--477
60
3.2
60
90
2
280
51
3
25
19
1.61
465--537
7
10.6
7
78
8
69
56
2
24
16
1.54
486--581
34
2.7
35
82
3
104
54
6
19
19
1.65
1449--1499
22
2.6
19
80
19
50
80
0
15
3
0.86
1450--1495
16
2.9
16
81
12
51
80
0
15
4
0.86
4789--4884
36
2.7
36
87
4
124
42
19
19
17
1.89
5880--5923
19
2.4
19
84
3
54
70
0
15
13
1.17
7264--7328
32
2.0
32
100
0
130
27
33
6
32
1.82
10089--10163
34
2.4
31
84
8
89
28
9
21
41
1.84
10102--10168
34
2.0
34
93
0
116
25
8
20
44
1.80
10105--10177
34
2.2
34
87
2
103
27
10
20
41
1.86
11726--11796
30
2.4
30
88
2
99
25
36
1
36
1.65
13928--14017
43
2.0
44
89
6
137
44
8
4
42
1.56
14609--14640
16
2.0
16
93
0
55
0
15
37
46
1.46

Tables:   1

The End!