Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011320.1 Corchorus capsularis cultivar CVL-1 contig11341, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31522

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
200--302
30
3.4
30
73
15
97
18
13
27
40
1.88
256--433
53
3.4
53
89
3
263
19
15
27
37
1.92
3792--3843
2
26.5
2
82
3
61
46
3
3
46
1.39
5065--5209
77
1.9
78
88
5
224
38
13
1
46
1.51
5056--5222
77
2.2
77
83
6
223
37
11
1
49
1.48
5446--5487
22
1.9
22
90
0
66
19
19
21
40
1.92
9397--9435
20
2.0
20
100
0
78
46
15
2
35
1.60
9638--9828
31
6.3
31
64
18
96
39
15
17
27
1.90
9626--9738
60
1.9
60
88
3
174
38
13
18
30
1.89
9638--9831
91
2.1
91
81
5
214
38
16
18
26
1.91
9729--9891
60
2.7
60
80
7
172
38
17
17
25
1.92
9576--9889
151
2.1
151
93
1
540
37
16
17
28
1.92
9698--9889
31
6.3
31
64
18
107
39
17
17
26
1.91
9934--10094
60
2.7
60
87
1
216
28
18
16
36
1.92
13460--13530
35
2.0
35
86
0
97
23
15
45
15
1.85
24444--24473
6
5.0
6
100
0
60
33
0
16
50
1.46
29888--29912
10
2.5
10
100
0
50
48
20
8
24
1.76
30843--30869
6
4.5
6
100
0
54
29
0
14
55
1.40
31289--31510
97
2.3
98
83
2
268
22
28
17
31
1.97
31289--31510
49
4.6
48
82
4
257
22
28
17
31
1.97

Tables:   1

The End!