Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011323.1 Corchorus capsularis cultivar CVL-1 contig11344, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29074

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--108
30
3.4
29
77
12
109
17
12
29
40
1.87
63--245
53
3.4
53
85
10
237
19
14
27
38
1.91
1596--1669
31
2.4
31
100
0
148
33
22
13
29
1.93
3770--3809
21
1.9
21
89
0
62
25
27
40
7
1.82
4181--4206
2
13.0
2
100
0
52
50
0
0
50
1.00
4529--4594
31
2.2
31
83
8
82
21
6
18
54
1.64
15725--15756
12
2.7
12
95
0
55
34
15
25
25
1.95
15776--15835
27
2.3
27
97
2
113
48
11
3
36
1.56
19487--19511
12
2.1
12
100
0
50
32
36
16
16
1.90
22621--22727
33
3.2
33
81
7
119
23
38
28
10
1.87
23692--23725
8
4.1
8
85
7
50
58
14
2
23
1.50

Tables:   1

The End!