Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011324.1 Corchorus capsularis cultivar CVL-1 contig11345, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15313

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
160--266
33
3.2
33
77
7
110
24
38
26
11
1.89
4530--4710
60
3.0
60
96
0
326
25
25
20
28
1.99
8176--8247
31
2.3
31
77
13
85
26
4
8
61
1.43
13208--13257
26
2.0
25
84
7
66
40
14
18
28
1.89
13452--13590
70
2.0
69
82
1
170
35
23
20
20
1.96
13539--13639
49
2.1
49
86
3
141
34
25
19
19
1.96
13468--13828
119
3.0
119
95
0
614
36
23
19
21
1.95
13722--13969
70
3.5
70
88
2
372
36
22
18
22
1.95
13706--13969
141
1.9
141
92
1
449
37
21
18
21
1.94
13958--14092
35
3.9
35
86
0
171
40
21
20
17
1.92
14067--14123
29
2.0
29
89
0
87
40
17
17
24
1.91
15125--15192
27
2.8
23
77
14
66
2
19
1
76
0.99
15109--15182
38
1.9
38
81
13
89
6
20
1
71
1.16
15122--15211
33
2.7
33
81
8
85
3
20
1
75
1.01
15159--15208
22
2.2
23
85
3
66
0
20
2
78
0.86
15147--15211
33
2.0
33
84
6
87
3
18
1
76
0.99

Tables:   1

The End!