Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011325.1 Corchorus capsularis cultivar CVL-1 contig11346, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4344
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30


Found at i:4025 original size:29 final size:28

Alignment explanation


    Indices: 3986--4069  Score: 102
    Period size: 28  Copynumber: 3.0  Consensus size: 28

       3976 AAAAATGGAC

                            *           
       3986 TAAAAATGACCAAAATACCCCTGA-ATG
          1 TAAAAATGACCAAAATGCCCCTGAGATG

                                           
       4013 TAAAAAAATGACCAAAATGCCCCT-ATGATG
          1 T--AAAAATGACCAAAATGCCCCTGA-GATG

             *                          
       4043 TGAAAATGACCAAAATGCCCCTG-GATG
          1 TAAAAATGACCAAAATGCCCCTGAGATG

       4070 ACCTTAAGAA


Statistics
Matches: 50,  Mismatches: 2, Indels: 10
        0.81            0.03        0.16

Matches are distributed among these distances:
  27    5  0.10
  28   21  0.42
  29   20  0.40
  30    4  0.08

ACGTcount: A:0.44, C:0.21, G:0.15, T:0.19


Consensus pattern (28 bp):   
TAAAAATGACCAAAATGCCCCTGAGATG
Done.