Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011326.1 Corchorus capsularis cultivar CVL-1 contig11347, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59132

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
261--597
22
15.6
22
68
11
160
34
13
9
41
1.78
393--479
45
1.9
45
83
0
111
39
12
10
37
1.78
838--896
31
1.9
31
92
0
100
54
3
13
28
1.55
1170--1198
2
14.5
2
100
0
58
51
0
0
48
1.00
2161--2525
156
2.3
156
77
7
357
30
16
18
33
1.93
5773--5801
2
14.5
2
100
0
58
48
0
0
51
1.00
8165--8250
4
20.5
4
74
17
52
6
23
2
67
1.27
8221--8253
11
3.0
11
86
13
50
3
24
0
72
0.98
11922--11978
30
1.9
30
96
0
105
38
12
26
22
1.89
15587--15630
2
22.0
2
90
0
61
43
0
6
50
1.29
15742--15769
2
14.0
2
100
0
56
50
0
0
50
1.00
16503--16561
28
2.0
29
90
6
93
32
10
23
33
1.88
20967--21043
40
1.9
40
97
0
145
27
10
33
28
1.90
25531--25666
43
3.1
43
62
22
102
33
7
12
47
1.69
25529--25706
88
2.0
88
97
0
338
34
8
11
46
1.70
34526--34577
23
2.3
23
86
0
68
57
0
7
34
1.27
41066--41144
28
2.8
28
88
7
106
41
11
17
29
1.84
41570--41620
25
2.0
25
100
0
102
27
33
7
31
1.85
53786--53881
38
2.6
37
78
6
113
16
14
10
58
1.63
54739--54977
118
2.0
119
86
5
340
36
10
7
45
1.67
55028--55065
19
2.0
20
85
15
53
31
5
2
60
1.33
55231--55414
22
8.3
22
72
11
106
35
8
16
39
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55232--55380
44
3.3
44
79
5
140
38
10
14
36
1.79
55450--56069
22
28.4
22
67
16
193
40
8
15
35
1.79
55912--55965
20
2.5
22
88
5
76
46
11
11
31
1.74
57582--57608
2
13.5
2
100
0
54
48
0
0
51
1.00
58905--58957
25
2.1
25
96
0
97
11
20
11
56
1.65
59064--59100
19
1.9
19
88
0
56
75
0
0
24
0.80

Tables:   1

The End!