Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011329.1 Corchorus capsularis cultivar CVL-1 contig11350, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49124

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--82
2
41.5
2
97
2
157
0
51
0
48
1.00
1321--1387
31
2.2
31
88
0
98
26
16
14
41
1.87
1392--1457
19
3.5
19
83
10
82
54
0
1
43
1.09
1391--1475
10
8.9
10
71
12
63
60
0
1
38
1.05
4763--4796
2
17.0
2
100
0
68
50
0
0
50
1.00
8726--8750
6
4.2
6
100
0
50
0
16
0
84
0.63
10153--10192
2
20.0
2
89
0
62
50
5
0
45
1.23
17191--17666
156
3.1
150
79
9
433
30
14
20
34
1.93
17232--17666
150
2.8
151
78
10
434
30
14
20
34
1.93
21626--21673
24
2.0
24
88
8
71
50
0
2
47
1.12
22374--22409
2
18.0
2
88
11
56
47
2
0
50
1.15
39799--39834
3
12.0
3
93
0
63
63
0
33
2
1.08
41583--41651
4
17.5
4
75
14
63
26
1
2
69
1.11
41606--41651
23
2.0
23
86
0
65
23
2
2
71
1.08
42891--42925
16
2.2
16
100
0
70
42
20
5
31
1.75
43515--43545
2
15.5
2
100
0
62
51
0
48
0
1.00

Tables:   1

The End!