Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011331.1 Corchorus capsularis cultivar CVL-1 contig11352, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14035
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1772 original size:44 final size:44

Alignment explanation


    Indices: 1691--1779  Score: 144
    Period size: 46  Copynumber: 2.0  Consensus size: 44

       1681 TAAATTTTTC

                             *                           
       1691 ATTAAAAAAATTAATTTTTGAAGTGAGAATGAAGGGTTAAAAAAA
          1 ATTAAAAAAATTAATTTATGAAGTGAGAATG-AGGGTTAAAAAAA

                                                         
       1736 ATTAAAAAATATTAATTTATGAAGTGAGAATG-GGGTTAAAAAAA
          1 ATTAAAAAA-ATTAATTTATGAAGTGAGAATGAGGGTTAAAAAAA

       1780 GAAAGGAAAA


Statistics
Matches: 42,  Mismatches: 1, Indels: 3
        0.91            0.02        0.07

Matches are distributed among these distances:
  44   12  0.29
  45    9  0.21
  46   21  0.50

ACGTcount: A:0.53, C:0.00, G:0.18, T:0.29


Consensus pattern (44 bp):   
ATTAAAAAAATTAATTTATGAAGTGAGAATGAGGGTTAAAAAAA

Found at i:5788 original size:17 final size:18

Alignment explanation


    Indices: 5762--5796  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

       5752 TGAATTTTAA

                 *            
       5762 AATAATAAT-ATTTATTT
          1 AATAAAAATAATTTATTT

                              
       5779 AATAAAAATAATTTATTT
          1 AATAAAAATAATTTATTT

       5797 TAGTTAGAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    8  0.50
  18    8  0.50

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (18 bp):   
AATAAAAATAATTTATTT
Done.