genome.fa.s11332.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011332.1 Corchorus capsularis cultivar CVL-1 contig11353, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45007

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107--196	40	2.2	40	96	0	162	25	2	22	50	1.61
5146--5184	18	2.1	18	90	4	60	28	15	12	43	1.83
14447--14494	25	1.9	25	95	0	87	54	4	2	39	1.32
14755--14824	13	5.6	13	78	10	65	37	15	11	35	1.84
14754--14821	24	2.8	26	82	10	90	39	14	11	33	1.83
15399--15439	21	2.0	20	85	4	55	48	19	0	31	1.49
19441--19475	16	2.1	17	89	5	54	71	0	28	0	0.86
21566--21608	19	2.3	19	79	0	50	39	0	51	9	1.34
22506--22752	80	3.1	80	95	0	449	23	17	27	30	1.97
23089--23231	46	3.1	46	84	1	178	32	15	23	28	1.95
23391--23507	36	3.2	36	82	2	146	25	21	24	28	1.99
23986--24069	17	4.5	20	80	12	99	27	20	30	21	1.98
23986--24069	37	2.3	37	97	0	159	27	20	30	21	1.98
24042--24372	45	7.2	45	73	11	260	25	16	25	32	1.96
24131--24200	20	3.3	20	70	14	59	28	18	25	27	1.98
24272--24372	47	2.1	47	85	7	134	25	18	25	29	1.98
24970--25110	75	1.9	77	90	3	232	25	19	20	34	1.96
24929--25140	40	5.4	40	83	6	238	25	17	19	37	1.94
25147--25376	110	2.1	110	86	2	320	33	23	21	21	1.97
25341--25471	68	1.9	68	89	3	201	33	20	21	24	1.97
29686--29746	30	2.0	30	96	0	113	49	16	9	24	1.76
38254--38285	15	2.1	16	94	5	57	25	12	6	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39752--39792	19	2.2	19	86	0	55	9	39	2	48	1.49
44650--44684	2	17.5	2	100	0	70	51	0	0	48	1.00

Tables:   1

The End!