Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011346.1 Corchorus capsularis cultivar CVL-1 contig11367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79571

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3612--3660
21
2.2
22
85
7
64
40
6
2
51
1.38
12718--12780
30
2.1
30
91
5
101
28
15
34
20
1.94
21033--21120
42
2.1
42
97
0
167
21
12
19
46
1.82
21394--21434
21
2.0
21
85
9
57
21
0
29
48
1.50
21895--21926
11
2.9
11
95
0
55
87
0
12
0
0.54
21898--21944
8
5.9
8
79
16
53
87
0
10
2
0.63
49066--49114
21
2.3
20
83
10
62
30
26
32
10
1.89
57550--57598
21
2.3
21
89
0
71
30
28
32
8
1.86
61069--61119
20
2.4
22
74
9
61
19
5
9
64
1.44
61681--61705
10
2.5
10
100
0
50
48
20
8
24
1.76
62629--62662
6
5.5
6
96
3
59
29
0
14
55
1.40
68757--68781
10
2.5
10
100
0
50
48
20
8
24
1.76
69710--69755
6
7.5
6
97
2
83
30
0
15
54
1.41
70810--71325
50
10.3
50
90
0
780
24
27
11
36
1.90
70891--70970
23
3.3
23
68
19
72
20
28
11
40
1.86
71164--71247
27
3.3
27
66
19
79
26
28
11
33
1.92
71191--71270
23
3.3
23
67
13
70
21
30
11
37
1.88
71180--71261
27
3.2
27
61
25
68
26
26
12
34
1.92
71682--72177
65
7.6
64
88
4
697
26
23
14
35
1.93
71682--72177
131
3.8
130
89
2
735
26
23
14
35
1.93
71682--72177
196
2.5
196
92
0
814
26
23
14
35
1.93
74489--74538
14
3.7
13
84
7
64
38
12
8
42
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74491--74547
27
2.1
28
80
9
64
35
14
8
42
1.76
76242--76267
10
2.6
10
100
0
52
50
19
7
23
1.73
77170--77204
13
2.7
13
100
0
70
20
8
8
62
1.49

Tables:   1

The End!