Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011348.1 Corchorus capsularis cultivar CVL-1 contig11369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84923

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7710--7802
42
2.2
42
96
1
170
10
24
52
11
1.70
11428--11462
13
2.7
13
95
0
61
60
8
11
20
1.57
20573--20603
15
2.1
15
93
0
53
16
19
32
32
1.94
20588--20676
24
3.7
24
93
0
151
16
21
38
23
1.93
22254--22302
26
1.9
25
83
4
62
51
10
20
18
1.75
28256--28429
91
1.9
92
83
3
226
24
20
22
32
1.98
29120--29195
36
2.1
36
87
4
109
26
25
22
26
2.00
30205--30270
19
3.4
19
72
25
57
0
15
3
81
0.80
30206--30260
15
3.5
15
87
5
74
0
16
1
81
0.77
37316--37340
4
6.2
4
100
0
50
0
0
24
76
0.80
37706--37854
38
4.0
38
77
10
173
24
13
19
42
1.87
40156--40189
11
3.1
11
82
0
50
0
8
20
70
1.13
50953--50979
4
6.8
4
100
0
54
25
0
0
74
0.83
51742--51770
10
2.9
10
100
0
58
0
37
0
62
0.96
51731--51770
20
2.1
19
86
13
55
0
37
0
62
0.95
55382--55585
60
3.5
61
78
10
187
34
14
15
35
1.88
56612--56691
31
2.6
31
87
0
124
30
22
12
35
1.91
57580--57677
48
2.0
48
94
0
169
53
9
22
15
1.70
58717--58777
29
2.1
29
87
0
86
54
9
6
29
1.59
61894--61918
13
1.9
13
100
0
50
44
0
0
56
0.99
62787--62850
29
2.3
26
82
12
74
29
9
17
43
1.80
62929--62994
30
2.2
30
94
0
114
16
22
7
53
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63170--63233
33
1.9
34
90
3
103
14
29
6
50
1.67
67297--67350
21
2.6
21
100
0
108
9
38
37
14
1.79
74543--74647
33
3.2
33
78
5
113
24
8
21
44
1.80
75057--75119
30
2.1
30
91
5
101
31
15
31
20
1.94
76681--76724
19
2.4
18
96
3
79
2
4
11
81
0.92
76690--76730
18
2.2
19
86
4
57
4
4
12
78
1.07
76681--76730
19
2.6
19
90
6
66
4
4
12
80
1.00
77708--77789
40
2.0
41
85
4
112
35
31
18
14
1.91
78881--78937
25
2.3
25
85
8
80
71
3
17
7
1.22

Tables:   1

The End!