Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011349.1 Corchorus capsularis cultivar CVL-1 contig11370, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13596
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:10 original size:3 final size:3

Alignment explanation


    Indices: 3--52  Score: 100
    Period size: 3  Copynumber: 16.7  Consensus size: 3

          1 TT

                                                                           
          3 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

              
         51 AT
          1 AT

         53 GATGATGATG


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   47  1.00

ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34


Consensus pattern (3 bp):   
ATA

Found at i:57 original size:3 final size:3

Alignment explanation


    Indices: 51--78  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

         41 AATAATAATA

                                                 
         51 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG A

         79 CATTGTTAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32


Consensus pattern (3 bp):   
ATG

Done.