genome.fa.s11351.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011351.1 Corchorus capsularis cultivar CVL-1 contig11372, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65924

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7963--7999	18	2.1	18	90	10	58	13	10	27	48	1.75
10066--10120	10	5.1	11	72	10	51	25	43	23	7	1.79
10055--10148	33	3.0	30	82	11	118	24	39	27	8	1.84
10066--10132	33	2.0	33	100	0	134	23	40	26	8	1.84
10798--10827	14	2.1	14	100	0	60	43	13	36	6	1.70
10942--11530	37	16.1	36	87	5	726	26	17	10	45	1.80
10942--11519	184	3.2	183	86	5	737	26	17	10	45	1.81
11537--11644	40	2.6	41	80	11	121	26	16	9	47	1.77
14224--15184	481	2.0	480	95	0	1715	40	15	15	28	1.87
17026--17129	53	2.0	53	88	0	154	17	20	26	35	1.94
21877--21954	39	2.0	40	82	2	95	52	3	10	33	1.53
24998--25031	11	3.2	10	84	15	50	50	17	2	29	1.61
44597--44825	124	1.8	124	96	0	422	25	22	20	31	1.98
50857--50896	20	2.0	20	85	9	55	15	15	10	60	1.60
57886--57989	27	3.8	27	94	1	172	45	20	15	19	1.86
57885--58009	27	4.5	28	89	4	121	44	23	13	18	1.85
58223--58789	50	11.3	51	84	6	251	23	28	12	35	1.92
58296--58816	50	10.4	50	91	0	819	23	28	12	36	1.90
58432--58511	23	3.3	23	65	19	63	17	33	12	36	1.87
58632--58711	23	3.3	23	65	19	63	18	30	12	38	1.88
58993--59436	64	7.0	64	82	4	488	27	25	13	32	1.94
59036--59436	186	2.1	190	83	3	497	26	25	13	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64059--64136	27	2.8	27	94	3	129	47	20	14	17	1.82
65471--65522	26	2.0	26	88	0	77	15	15	25	44	1.85

Tables:   1

The End!