Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011358.1 Corchorus capsularis cultivar CVL-1 contig11379, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13315
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36


Found at i:12808 original size:23 final size:23

Alignment explanation


    Indices: 12781--12828  Score: 69
    Period size: 23  Copynumber: 2.1  Consensus size: 23

      12771 AAGTGAACCT

                       *           
      12781 AACCCGATCCGGGCCCGAACCCG
          1 AACCCGATCCGAGCCCGAACCCG

                    *    *         
      12804 AACCCGATTCGAGTCCGAACCCG
          1 AACCCGATCCGAGCCCGAACCCG

              
      12827 AA
          1 AA

      12829 GATACCCGAA


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.27, C:0.42, G:0.23, T:0.08


Consensus pattern (23 bp):   
AACCCGATCCGAGCCCGAACCCG

Found at i:12851 original size:15 final size:16

Alignment explanation


    Indices: 12818--12852  Score: 63
    Period size: 16  Copynumber: 2.2  Consensus size: 16

      12808 CGATTCGAGT

                            
      12818 CCGAACCCGAAGATAC
          1 CCGAACCCGAAGATAC

                            
      12834 CCGAACCCGAAG-TAC
          1 CCGAACCCGAAGATAC

                
      12849 CCGA
          1 CCGA

      12853 GCCCAAACCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  15    7  0.37
  16   12  0.63

ACGTcount: A:0.34, C:0.40, G:0.20, T:0.06


Consensus pattern (16 bp):   
CCGAACCCGAAGATAC
Done.