Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011361.1 Corchorus capsularis cultivar CVL-1 contig11382, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3381
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30


Found at i:764 original size:20 final size:20

Alignment explanation


    Indices: 739--777  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        729 TCCCATAGTC

                                 
        739 CTTG-AATTGAGCTCTCAAAG
          1 CTTGAAATTGAGCT-TCAAAG

                      *        
        759 CTTGAAATTGCGCTTCAAA
          1 CTTGAAATTGAGCTTCAAA

        778 ATCAGCCATG


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    9  0.53
  21    8  0.47

ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31


Consensus pattern (20 bp):   
CTTGAAATTGAGCTTCAAAG
Done.