genome.fa.s11364.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011364.1 Corchorus capsularis cultivar CVL-1 contig11385, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76895

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5853--5898	24	1.9	24	81	0	56	52	15	10	21	1.73
9610--9821	106	2.0	106	99	0	415	28	15	21	34	1.93
10014--10052	19	2.1	19	85	0	51	76	5	0	17	0.96
11006--11068	30	2.1	30	91	5	101	30	17	33	19	1.95
11994--13056	158	6.7	159	83	4	1227	28	21	22	27	1.99
14227--14271	23	2.0	23	86	4	65	11	35	13	40	1.80
15734--15780	13	3.5	13	72	16	51	12	25	0	61	1.31
15842--16043	21	10.1	20	70	19	136	21	23	5	50	1.69
15898--15976	35	2.2	37	90	6	135	21	22	5	50	1.68
15842--16012	79	2.2	80	83	7	206	22	22	5	50	1.69
15934--16045	22	5.2	22	82	7	131	21	22	5	50	1.68
15932--16045	44	2.6	42	83	6	147	21	22	5	50	1.68
15921--15998	15	5.4	14	74	7	57	21	20	5	52	1.66
16000--16078	35	2.3	35	80	4	97	18	25	6	49	1.71
16055--16190	14	10.0	14	69	19	74	19	22	4	54	1.61
16113--16198	7	12.1	7	69	10	50	19	18	2	59	1.49
16101--16190	28	3.1	29	84	9	114	18	21	3	56	1.56
16185--16279	26	3.4	26	83	12	93	26	16	4	52	1.62
16212--16294	32	2.5	33	83	13	116	24	19	3	53	1.61
16284--16317	14	2.4	14	80	0	50	17	20	2	58	1.51
26818--26852	16	2.2	16	89	0	52	22	2	5	68	1.24
29451--29484	17	1.9	18	88	5	52	67	14	17	0	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30843--31014	22	8.4	21	69	18	96	22	23	5	48	1.72
30871--30939	35	1.9	36	88	2	104	24	21	5	47	1.72
30905--31016	22	5.2	22	81	5	131	23	22	5	49	1.70
30903--31003	44	2.3	43	88	3	148	23	21	4	49	1.69
30904--30976	15	4.9	15	70	18	55	24	19	2	53	1.58
30972--31038	35	1.9	35	81	6	82	19	26	7	46	1.76
31027--31149	14	9.0	13	66	17	54	19	21	4	54	1.62
31025--31149	28	4.5	29	73	13	86	19	22	4	53	1.63
31060--31149	28	3.1	29	84	9	105	18	20	4	56	1.58
31144--31238	26	3.4	26	83	12	93	26	16	4	52	1.62
31171--31253	32	2.5	33	83	13	116	24	19	3	53	1.61
41082--41106	10	2.5	10	100	0	50	36	24	28	12	1.91
42934--42969	10	3.5	10	85	7	54	86	0	0	13	0.58
42921--42969	17	2.9	16	84	6	62	81	0	2	16	0.78
43501--43929	49	8.8	48	80	7	402	23	27	16	32	1.96
43748--43978	97	2.4	97	79	7	236	23	27	16	32	1.96
46186--46238	21	2.5	21	87	0	70	7	30	33	28	1.85
50532--50566	18	1.9	18	100	0	70	74	5	5	14	1.19
50801--50869	33	2.1	33	81	5	77	52	1	31	14	1.51
52402--52487	42	2.1	41	85	10	113	52	20	8	18	1.71
53435--53490	20	2.8	20	75	0	58	35	12	1	50	1.51
53635--53692	21	2.8	21	73	5	55	29	6	13	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53713--53752	19	2.1	19	86	9	55	32	7	17	42	1.77
53726--53781	19	2.9	19	75	17	53	32	7	14	46	1.71
53830--53877	21	2.2	22	85	3	62	33	8	4	54	1.50
53847--53899	21	2.5	21	78	0	61	30	7	13	49	1.69
62298--62324	2	13.5	2	100	0	54	51	0	0	48	1.00
63262--63318	24	2.6	21	83	10	62	5	28	8	57	1.50
64262--64287	12	2.2	12	100	0	52	26	30	11	30	1.92
67296--67392	50	2.0	50	91	2	160	31	35	11	21	1.89
68483--68532	21	2.5	20	78	9	57	50	16	16	18	1.79

Tables:   1

The End!