Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011367.1 Corchorus capsularis cultivar CVL-1 contig11388, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1965
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35


Found at i:742 original size:13 final size:13

Alignment explanation


    Indices: 724--760  Score: 65
    Period size: 14  Copynumber: 2.8  Consensus size: 13

        714 AAATTATTAT

                         
        724 TTTTTGAAAAACA
          1 TTTTTGAAAAACA

                          
        737 TTTTTGAAAAAACA
          1 TTTTTG-AAAAACA

                      
        751 TTTTTGAAAA
          1 TTTTTGAAAA

        761 TCATGACTCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  13   10  0.43
  14   13  0.57

ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41


Consensus pattern (13 bp):   
TTTTTGAAAAACA

Found at i:794 original size:35 final size:34

Alignment explanation


    Indices: 738--805  Score: 109
    Period size: 35  Copynumber: 2.0  Consensus size: 34

        728 TGAAAAACAT

                                   *          
        738 TTTTGAAAAAACATTTTTGAAAATCATGACTCTC
          1 TTTTGAAAAAACATTTTTGAAAACCATGACTCTC

                        *                     
        772 TTTTGAAAAACATATTTTTGAAAACCATGACTCT
          1 TTTTGAAAAA-ACATTTTTGAAAACCATGACTCT

        806 ACTATTCCAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  34   10  0.32
  35   21  0.68

ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38


Consensus pattern (34 bp):   
TTTTGAAAAAACATTTTTGAAAACCATGACTCTC
Done.