Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011369.1 Corchorus capsularis cultivar CVL-1 contig11390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22486

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3690--3754
25
2.7
23
73
15
60
15
7
12
64
1.48
6965--6997
14
2.4
14
94
0
57
24
15
15
45
1.84
7127--7165
20
2.0
20
89
0
60
28
10
20
41
1.85
10393--10663
27
10.2
26
74
19
172
54
2
22
19
1.57
10506--10560
16
3.5
16
69
20
53
56
0
21
21
1.42
10493--10560
30
2.2
32
82
10
88
60
0
20
19
1.37
10396--10663
26
10.1
26
72
18
162
55
2
22
19
1.57
10536--10693
80
2.0
80
81
10
191
54
5
20
19
1.63
14661--14788
66
1.9
66
85
0
175
26
9
18
45
1.80
14863--14928
19
3.5
19
77
8
80
22
7
25
43
1.79
16107--16223
35
3.4
34
90
0
153
37
15
7
39
1.76
16249--16476
21
12.2
21
63
23
62
39
15
6
38
1.73
16177--16331
56
2.9
54
89
3
233
36
15
7
40
1.75
16278--16366
35
2.5
35
96
0
160
38
16
7
37
1.78
16107--16502
91
4.4
91
85
3
480
38
15
7
37
1.76
16317--16422
56
1.9
56
100
0
212
39
16
6
36
1.75
16373--16457
35
2.4
35
94
0
143
41
17
5
35
1.74
16439--16478
21
1.9
21
94
0
71
42
12
0
45
1.42
17196--17240
20
2.2
20
92
0
72
4
24
0
71
1.05
17196--17249
20
2.7
18
83
13
54
3
24
0
72
1.01
19735--19854
59
2.0
59
91
3
197
46
17
10
25
1.80
19953--20026
29
2.7
27
77
8
76
41
25
12
20
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20254--20359
46
2.3
46
91
0
167
35
24
16
23
1.94
20326--20486
79
2.0
79
85
2
216
31
29
14
24
1.95
20644--20945
109
2.8
108
84
7
394
32
22
15
28
1.95
20638--20945
54
5.7
54
83
6
379
32
23
15
28
1.95

Tables:   1

The End!