genome.fa.s11370.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011370.1 Corchorus capsularis cultivar CVL-1 contig11391, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26663

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120--150	14	2.1	15	94	5	55	0	12	0	87	0.55
801--854	14	3.8	14	80	7	56	35	11	7	46	1.67
3951--4047	19	5.4	19	64	14	71	37	16	9	37	1.81
3945--4204	35	7.3	35	77	6	200	37	15	8	38	1.78
4015--4168	56	2.8	54	84	5	186	37	14	7	40	1.75
4087--4132	21	2.2	21	88	0	65	39	8	4	47	1.54
4095--4134	21	1.9	21	94	0	71	40	10	0	50	1.36
3947--4340	91	4.4	91	83	5	469	38	15	7	37	1.77
4155--4260	56	1.9	56	96	0	194	40	16	6	36	1.74
4211--4295	35	2.4	35	92	0	143	40	16	7	36	1.76
4277--4316	21	1.9	21	94	0	71	42	12	0	45	1.42
5040--5084	20	2.2	20	92	0	72	4	22	2	71	1.15
5040--5093	20	2.7	18	86	8	54	3	22	1	72	1.10
7547--7666	59	2.0	59	88	3	179	46	16	10	25	1.80
7765--7837	28	2.6	28	91	0	110	43	28	12	15	1.82
15475--15499	2	12.5	2	100	0	50	48	0	0	52	1.00
15654--15703	5	10.2	5	76	20	52	80	0	0	20	0.72
15644--15703	15	4.3	14	78	17	63	80	0	0	20	0.72
15644--15699	18	3.2	17	85	11	78	80	0	0	19	0.71
15648--15713	34	2.0	34	87	3	98	77	1	0	21	0.85
16752--16784	14	2.4	14	94	0	57	24	15	15	45	1.84
20374--20445	30	2.4	31	83	2	101	48	8	16	26	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20498--20556	15	4.1	15	74	12	52	55	5	20	18	1.61
20437--20623	22	8.7	22	74	11	140	50	5	21	21	1.68
20666--20897	22	10.5	22	67	18	81	52	4	19	23	1.65
20440--20801	42	8.7	42	70	19	199	51	4	21	22	1.67
20934--21129	27	7.2	26	71	18	107	53	3	21	21	1.59
23421--23459	20	2.0	20	100	0	78	35	15	12	35	1.86

Tables:   1

The End!