genome.fa.s11371.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011371.1 Corchorus capsularis cultivar CVL-1 contig11392, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64813

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2152--2203	24	2.2	24	100	0	104	15	38	7	38	1.76
8622--8674	24	2.2	24	96	0	97	15	37	7	39	1.75
18340--18419	1	80.0	1	75	0	70	87	8	1	2	0.69
18339--18419	27	3.0	27	78	7	85	86	9	1	2	0.72
23330--23435	41	2.6	41	90	1	167	45	13	14	27	1.81
27318--27384	31	2.2	30	82	10	75	20	31	16	31	1.95
28241--28271	2	15.5	2	100	0	62	51	0	0	48	1.00
28522--28562	20	2.0	20	90	0	64	51	24	0	24	1.49
33005--33064	30	2.0	30	90	0	93	33	25	23	18	1.97
40750--40800	25	2.0	25	100	0	102	31	29	23	15	1.95
47007--47066	30	2.0	30	93	0	102	35	21	25	18	1.96
48171--48222	22	2.4	22	86	0	68	21	23	32	23	1.98
48246--48293	22	2.2	22	88	0	69	18	25	33	22	1.97
53871--53900	13	2.3	13	100	0	60	73	10	0	16	1.09
54307--54528	27	8.0	27	73	15	141	18	22	3	55	1.57
54307--54500	58	3.4	56	75	13	168	18	23	3	55	1.57
54316--54474	80	1.9	80	81	11	180	18	23	3	54	1.58
54313--54528	111	1.9	113	81	7	262	18	22	3	56	1.56
54517--54556	21	1.9	21	84	0	53	27	22	0	50	1.50
54539--54658	7	16.7	7	69	14	66	20	23	2	54	1.57
54518--54678	36	4.5	36	90	1	243	20	22	1	54	1.54
54702--54790	40	2.2	40	82	7	101	23	22	3	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54868--55091	80	2.8	80	84	3	263	22	21	4	50	1.67
54870--55088	40	5.4	40	77	6	228	22	20	5	52	1.66
55067--55375	32	9.7	32	88	3	435	18	24	3	53	1.61
55058--55375	127	2.5	128	86	4	437	18	24	4	53	1.62
55066--55375	159	1.9	160	87	4	448	18	24	3	53	1.60
63381--63412	16	2.0	16	93	0	55	71	18	9	0	1.12

Tables:   1

The End!