Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011373.1 Corchorus capsularis cultivar CVL-1 contig11394, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65460

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3001--3032
16
2.0
16
93
0
55
71
18
9
0
1.12
5058--5132
36
2.1
36
90
7
118
52
2
25
20
1.60
5093--5346
22
11.6
22
72
16
167
51
4
22
21
1.65
5340--5420
40
2.0
40
95
0
144
54
6
20
18
1.65
5430--5530
35
2.8
34
80
10
112
56
4
21
16
1.59
5618--5718
7
15.1
7
67
13
61
55
1
26
15
1.51
5635--5708
19
3.8
19
71
7
67
55
1
27
16
1.49
5607--5726
47
2.6
46
88
5
170
55
2
25
16
1.54
5399--5722
129
2.5
128
76
16
371
55
4
22
17
1.58
5695--5822
35
3.6
34
80
9
132
52
3
26
17
1.62
5861--5912
21
2.5
20
82
14
61
51
7
15
25
1.69
15715--15752
15
2.5
15
87
8
51
13
23
21
42
1.88
19587--19627
21
2.1
18
86
13
55
36
14
24
24
1.93
27712--27752
21
2.1
18
86
13
55
36
12
26
24
1.91
35940--35996
24
2.4
24
90
0
87
57
12
26
3
1.50
53094--53129
3
11.7
3
94
5
63
66
0
0
33
0.92
55987--56032
21
2.1
22
88
4
67
28
13
17
41
1.86
63331--63368
11
3.5
11
89
10
51
39
0
2
57
1.12
63706--63764
31
1.9
31
85
0
82
8
16
42
32
1.79
63720--63809
16
5.7
16
78
3
85
7
14
36
41
1.75
64440--64477
3
12.7
3
100
0
76
34
0
0
65
0.93

Tables:   1

The End!