Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011375.1 Corchorus capsularis cultivar CVL-1 contig11396, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41146

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1428--1591
82
2.0
81
90
1
256
22
17
22
37
1.94
8286--8314
2
14.5
2
100
0
58
48
0
0
51
1.00
12754--12793
20
2.0
20
100
0
80
35
10
15
40
1.80
13711--13753
21
2.0
21
95
0
77
48
18
9
23
1.76
15059--15124
33
2.0
33
96
0
123
53
6
31
9
1.57
15165--15390
112
2.0
112
94
3
402
33
15
25
25
1.95
16112--16209
11
9.6
11
81
16
131
51
10
8
30
1.65
16098--16198
29
3.5
29
89
5
143
50
10
7
30
1.66
16112--16209
40
2.5
40
96
0
187
51
10
8
30
1.65
16111--16209
29
3.7
28
74
20
86
50
11
8
30
1.67
18450--18498
21
2.3
21
82
6
55
14
28
16
40
1.87
22633--22712
36
2.4
34
87
8
110
53
7
18
20
1.68
22772--22962
22
8.9
22
74
14
94
52
4
21
21
1.64
22781--22962
42
4.2
44
72
11
130
52
4
21
21
1.64
22781--22956
64
2.7
64
80
7
185
52
4
21
21
1.65
22951--22996
20
2.3
20
81
7
58
54
2
21
21
1.56
22846--22975
64
2.0
64
79
8
140
51
4
23
20
1.66
22814--22975
86
1.9
86
88
0
243
51
4
22
21
1.65
30873--30897
7
3.6
7
100
0
50
16
12
40
32
1.84
32043--32141
49
2.0
49
98
0
189
34
22
13
30
1.92
32203--32544
43
8.0
43
93
0
576
38
8
16
36
1.79
32528--32567
21
1.9
21
85
10
55
45
2
15
37
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32534--32578
21
2.2
20
84
4
54
40
2
15
42
1.59
32573--32634
19
3.4
19
65
13
58
37
9
16
37
1.81
32573--32675
35
2.9
35
89
0
152
36
7
17
37
1.79
32581--32687
35
3.2
34
88
5
130
36
8
17
37
1.80
33515--33619
33
3.2
33
83
0
120
26
9
22
40
1.85
34029--34091
30
2.1
30
85
5
83
28
15
34
20
1.94
38164--38231
24
2.8
24
82
10
84
60
10
26
2
1.43
39162--39188
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!