Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011377.1 Corchorus capsularis cultivar CVL-1 contig11398, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28506

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1190--1257
34
2.1
32
83
5
82
54
14
1
29
1.49
2191--2252
33
1.9
32
86
3
88
19
22
20
37
1.95
2518--2561
22
2.0
22
86
0
61
13
25
36
25
1.92
8112--8145
16
2.2
16
89
5
52
61
8
0
29
1.26
9425--9460
19
1.9
18
88
5
54
33
22
2
41
1.68
21767--21838
9
8.7
9
69
17
57
48
4
8
38
1.53
21773--21838
16
4.1
16
88
0
96
48
4
9
37
1.55
22096--22171
29
2.7
28
82
6
100
47
25
11
15
1.80
22642--22688
23
2.0
24
83
4
60
17
10
19
53
1.72
23371--23596
39
6.1
38
78
15
231
34
16
15
34
1.90
23383--23532
77
1.9
77
88
6
223
33
18
13
35
1.89
23497--23560
29
2.2
29
86
13
96
29
17
18
34
1.94
23461--23591
67
1.9
69
86
10
189
32
16
16
33
1.92
27069--27250
66
2.7
66
88
4
260
41
12
20
25
1.87
27133--27423
64
4.5
64
79
5
259
37
12
21
28
1.90
27199--27442
128
1.9
128
82
6
307
36
13
22
27
1.91
27659--27793
62
2.2
60
83
5
157
32
11
25
30
1.91
27684--27819
62
2.2
62
89
2
202
34
11
25
28
1.91
27736--27916
85
2.1
85
89
2
274
36
12
24
27
1.91
27884--28053
58
2.9
58
88
1
241
37
15
22
24
1.93
28028--28152
40
3.4
36
75
13
119
40
14
20
25
1.90
28081--28272
62
3.1
61
87
3
260
36
13
25
25
1.91

Tables:   1

The End!