Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001138.1 Corchorus capsularis cultivar CVL-1 contig01138, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15061
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35


Found at i:5736 original size:17 final size:17

Alignment explanation


    Indices: 5714--5746  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       5704 GATATTGTTG

                             
       5714 TTTAATTATTAATTAAT
          1 TTTAATTATTAATTAAT

                            
       5731 TTTAATTATTAATTAA
          1 TTTAATTATTAATTAA

       5747 ATAATGGATT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58


Consensus pattern (17 bp):   
TTTAATTATTAATTAAT

Found at i:8583 original size:2 final size:2

Alignment explanation


    Indices: 8568--8637  Score: 83
    Period size: 2  Copynumber: 34.5  Consensus size: 2

       8558 ATCAAATCTC

                                                                           
       8568 AT AT AT ACT CAT AT AT A- AT AT A- AT AT AT A- AT AT AT AGT GAT
          1 AT AT AT A-T -AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T -AT

                                                       
       8609 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       8638 CTAGTTAAAG


Statistics
Matches: 61,  Mismatches: 0, Indels: 14
        0.81            0.00        0.19

Matches are distributed among these distances:
   1    3  0.05
   2   52  0.85
   3    4  0.07
   4    2  0.03

ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44


Consensus pattern (2 bp):   
AT

Done.