Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011382.1 Corchorus capsularis cultivar CVL-1 contig11403, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56676

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3711--3767
22
2.6
21
81
10
69
38
21
5
35
1.76
3804--3868
22
2.8
23
81
9
78
40
13
6
40
1.70
3827--3889
22
2.7
24
85
7
85
44
11
6
38
1.66
3949--4024
22
3.5
22
77
8
84
36
14
10
38
1.81
3808--3990
98
1.9
98
89
1
287
38
14
8
38
1.76
3992--4042
22
2.3
22
82
0
66
39
13
15
31
1.87
4078--4130
22
2.5
22
84
3
72
33
7
13
45
1.71
4208--4250
22
2.0
22
90
0
68
39
18
11
30
1.86
4875--5020
22
6.7
22
77
10
106
28
9
18
43
1.81
9329--9438
41
2.7
41
92
1
175
18
22
3
55
1.58
9344--9532
7
27.1
7
68
10
84
16
22
3
57
1.53
9491--9710
22
10.2
22
73
14
104
21
19
4
54
1.61
9565--9644
20
4.0
20
77
11
74
21
18
6
53
1.66
9505--9739
44
5.5
44
76
13
132
21
20
3
54
1.61
9741--9789
15
3.2
15
77
13
55
28
18
4
48
1.66
10187--10307
34
3.5
34
72
14
120
27
16
8
47
1.75
10165--10319
71
2.2
71
91
0
256
25
19
8
46
1.78
10285--10693
55
7.5
55
91
1
660
25
19
7
47
1.75
10285--10693
164
2.5
164
93
1
703
25
19
7
47
1.75
10676--10749
22
3.5
22
81
7
82
22
18
5
52
1.66
10741--10823
30
2.7
30
75
15
89
22
20
8
48
1.76
10794--10862
35
1.9
36
83
13
90
21
18
8
50
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14325--14382
29
2.0
29
93
0
98
44
8
8
37
1.66
14660--14732
28
2.6
28
88
0
92
43
27
12
16
1.83
14969--15167
45
4.4
45
87
3
267
31
15
22
30
1.95
17195--17233
11
3.5
11
82
6
51
0
17
0
82
0.68
17194--17249
24
2.3
24
90
6
87
0
19
0
80
0.71
17196--17252
22
2.5
23
88
5
80
0
21
0
78
0.74
17879--17931
15
3.8
14
78
14
56
35
11
5
47
1.63
21403--21542
21
6.6
21
72
9
97
18
19
4
57
1.56
21405--21527
43
2.9
42
78
10
115
17
20
4
56
1.59
21525--21581
17
3.1
17
77
18
60
22
17
3
56
1.56
21564--21680
22
5.5
22
70
15
93
21
20
5
52
1.65
21930--22193
54
4.8
54
87
4
363
25
18
6
49
1.71
21930--22231
109
2.8
106
85
9
339
24
18
6
50
1.70
22192--22550
21
16.9
21
72
11
218
18
20
6
54
1.65
22412--22496
22
3.9
23
78
10
81
21
20
3
55
1.58
26733--26787
16
3.4
16
68
22
51
49
10
20
20
1.78
26731--26799
33
2.1
33
100
0
138
53
11
17
17
1.72
29017--29041
2
12.5
2
100
0
50
52
0
0
48
1.00
29270--29328
18
3.6
18
71
21
65
16
23
25
33
1.96
29265--29367
31
3.3
31
93
1
161
13
26
28
32
1.94
30024--30088
34
1.9
34
87
0
94
32
40
10
16
1.84
32695--32771
39
2.0
39
87
2
111
41
9
10
38
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42260--42284
7
3.6
7
100
0
50
44
16
12
28
1.83
51002--51027
6
4.3
6
100
0
52
50
0
50
0
1.00
51175--51209
2
17.5
2
100
0
70
48
0
0
51
1.00
54839--54953
1
115.0
1
71
0
86
0
1
12
86
0.66
54840--54955
6
20.2
6
84
8
136
0
1
12
85
0.68
55851--55914
32
2.0
33
87
9
96
48
10
7
32
1.67

Tables:   1

The End!