Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011390.1 Corchorus capsularis cultivar CVL-1 contig11411, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11906
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27


Found at i:783 original size:16 final size:16

Alignment explanation


    Indices: 762--797  Score: 54
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        752 TAAAACATAT

                            
        762 ATAATAATAAATAATA
          1 ATAATAATAAATAATA

                      * *   
        778 ATAATAATAAGTGATA
          1 ATAATAATAAATAATA

                
        794 ATAA
          1 ATAA

        798 CAATTTTTGA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31


Consensus pattern (16 bp):   
ATAATAATAAATAATA

Found at i:9484 original size:28 final size:28

Alignment explanation


    Indices: 9452--9506  Score: 101
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       9442 TTTGCATCCA

                      *                 
       9452 GGGGCATTTTGGTCATTTTTAAGTTCAG
          1 GGGGCATTTTAGTCATTTTTAAGTTCAG

                                       
       9480 GGGGCATTTTAGTCATTTTTAAGTTCA
          1 GGGGCATTTTAGTCATTTTTAAGTTCA

       9507 CCTTCAATTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.20, C:0.11, G:0.25, T:0.44


Consensus pattern (28 bp):   
GGGGCATTTTAGTCATTTTTAAGTTCAG
Done.